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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.1 nTPM
HPA:151.1 nTPM
GTEx:139.7 nTPM
FANTOM5:372.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043060
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.1
overview
Male, age 65
Small intestine sample 232
nTPM: 170.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 161.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 126.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 145.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 139.7
Samples: 187

Max nTPM: 323.8
Min nTPM: 68.0
Std nTPM: 40.8
Median nTPM: 131.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 323.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 320.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 269.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 258.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 251.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 250.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 237.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 233.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 216.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 210.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 208.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 207.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 207.5
GTEX-1192X-2526-SM-59868 50-59 years, male 203.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 200.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 200.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 199.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 199.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 195.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 194.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 193.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 188.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 184.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 183.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 182.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 181.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 180.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 178.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 174.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 174.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 173.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 172.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 172.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 172.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 170.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 169.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 168.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 167.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 161.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 161.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 159.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 157.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 156.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 156.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 154.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 153.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 153.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 152.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 152.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 151.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 150.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 149.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 148.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 147.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 145.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 145.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 144.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 144.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 143.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 143.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 142.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 142.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 141.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 141.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 141.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 141.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 140.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 140.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 138.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 138.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 138.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 136.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 136.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 136.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 135.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 135.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 135.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 135.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 134.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 134.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 133.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 133.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 133.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 133.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 133.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 133.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 133.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 132.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 132.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 132.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 131.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 131.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 131.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 131.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 131.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 130.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 130.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 129.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 129.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 129.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 128.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 128.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 128.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 128.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 127.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 127.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 127.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 126.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 126.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 126.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 125.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 125.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 125.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 125.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 125.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 125.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 125.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 124.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 124.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 124.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 124.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 123.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 122.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 122.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 121.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 120.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 120.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 119.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 119.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 119.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 119.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 119.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 116.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 116.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 116.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 116.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 115.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 115.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 113.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 113.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 112.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 112.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 111.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 110.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 109.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 109.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 109.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 109.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 108.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 108.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 107.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 106.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 106.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 106.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 105.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 105.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 104.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 104.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 103.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 103.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 103.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 102.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 102.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 102.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 101.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 99.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 99.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 99.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 99.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 99.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 98.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 98.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 98.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 98.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 97.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 97.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 96.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 95.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 94.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 93.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 93.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 87.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 83.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 81.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 80.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 72.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 68.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

372.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 372.1
FF:10024-101D6 15,40,85 years, mixed 372.1

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