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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.7 nTPM
GTEx:148.7 nTPM
FANTOM5:391.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043060
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 148.7
Samples: 156

Max nTPM: 311.4
Min nTPM: 51.1
Std nTPM: 36.9
Median nTPM: 144.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 311.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 252.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 242.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 234.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 229.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 227.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 214.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 208.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 207.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 205.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 204.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 204.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 202.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 200.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 200.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 194.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 194.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 190.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 190.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 187.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 187.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 185.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 183.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 182.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 182.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 180.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 180.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 179.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 179.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 178.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 178.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 177.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 176.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 176.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 176.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 174.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 171.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 170.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 169.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 164.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 163.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 163.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 163.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 162.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 162.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 162.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 160.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 160.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 160.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 159.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 159.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 158.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 157.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 157.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 157.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 157.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 157.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 157.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 156.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 156.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 155.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 154.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 153.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 152.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 152.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 152.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 151.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 150.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 150.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 150.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 149.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 149.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 148.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 147.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 146.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 145.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 145.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 145.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 144.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 144.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 144.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 144.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 143.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 143.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 143.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 143.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 143.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 142.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 141.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 141.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 141.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 140.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 140.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 139.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 138.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 138.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 137.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 137.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 137.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 137.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 137.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 134.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 134.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 133.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 132.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 130.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 129.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 126.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 126.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 126.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 126.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 125.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 125.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 125.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 125.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 124.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 124.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 123.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 123.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 122.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 121.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 121.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 120.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 120.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 120.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 119.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 119.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 118.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 117.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 117.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 117.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 116.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 115.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 114.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 111.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 111.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 109.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 106.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 104.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 103.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 103.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 102.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 102.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 101.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 101.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 101.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 99.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 96.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 94.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 92.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 88.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 86.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 86.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 83.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 76.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 51.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 391.3
FF:10204-103F6 68 years, female 391.3

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