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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:293.7 nTPM
HPA Brain:97.5 nTPM
GTEx:293.7 nTPM
FANTOM5:444.8 Scaled Tags Per Million
Pig:106.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 76.3
2565 Male, age 75, midline 87.5
1981 Female, age 72, midline 87.3
2048 Male, age 55, midline 77.9
2194 Female, age 79, both hemispheres 68.3
2816 Male, age 47, midline 60.3
Cervical spinal cord, dorsal horn
nTPM: 81.6
2069 Male, age 47, both hemispheres 97.7
2296 Male, age 66, both hemispheres 96.0
2173 Female, age 72, unknown 93.6
2297 Male, age 75, both hemispheres 75.6
1877 Male, age 55, unknown 74.9
2721 Male, age 90, both hemispheres 52.0
Cervical spinal cord, ventral horn
nTPM: 97.5
2480 Male, age 75, both hemispheres 140.8
2809 Male, age 90, both hemispheres 120.8
2098 Female, age 72, unknown 91.6
2068 Male, age 55, unknown 91.5
2295 Male, age 66, both hemispheres 81.6
2820 Female, age 79, both hemispheres 59.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 293.7
Samples: 159

Max nTPM: 590.6
Min nTPM: 101.4
Std nTPM: 95.3
Median nTPM: 276.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 590.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 583.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 557.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 555.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 487.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 484.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 480.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 479.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 471.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 470.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 458.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 452.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 447.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 444.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 440.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 438.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 437.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 422.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 422.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 414.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 408.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 407.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 403.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 398.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 382.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 382.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 381.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 380.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 377.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 375.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 374.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 372.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 372.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 363.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 361.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 358.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 358.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 357.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 356.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 348.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 343.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 343.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 343.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 342.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 342.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 341.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 339.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 337.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 333.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 327.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 325.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 322.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 319.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 317.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 315.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 315.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 314.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 314.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 313.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 312.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 312.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 309.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 302.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 300.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 299.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 295.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 295.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 294.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 292.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 292.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 287.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 286.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 286.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 282.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 282.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 282.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 279.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 278.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 278.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 276.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 275.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 275.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 274.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 274.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 273.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 273.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 272.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 268.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 265.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 264.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 255.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 254.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 252.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 249.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 248.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 247.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 245.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 245.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 244.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 241.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 240.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 239.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 239.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 238.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 238.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 238.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 238.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 236.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 236.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 235.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 232.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 232.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 232.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 230.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 229.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 227.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 227.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 226.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 224.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 221.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 219.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 217.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 216.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 215.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 213.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 212.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 212.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 211.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 209.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 208.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 207.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 204.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 204.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 201.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 201.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 198.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 191.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 185.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 183.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 180.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 180.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 177.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 177.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 176.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 172.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 168.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 165.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 159.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 154.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 150.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 147.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 143.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

444.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 444.8
FF:10181-103D1 60 years, female 469.5
FF:10159-103A6 76 years, female 420.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 83.2
Samples: 4

Max nTPM: 91.8
Min nTPM: 71.4
Sample A Female 91.4
Sample B Female 78.3
Sample C Male 71.4
Sample D Male 91.8
Ventral spinal cord
nTPM: 106.9
Samples: 4

Max nTPM: 128.5
Min nTPM: 87.6
Sample A Female 113.0
Sample B Female 98.3
Sample C Male 128.5
Sample D Male 87.6

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