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  • CSRP1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:444.1 nTPM
HPA Brain:621.9 nTPM
GTEx:444.1 nTPM
FANTOM5:642.0 Scaled Tags Per Million
Pig:140.4 nTPM
Mouse:242.8 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

621.9
Sample id Sample description nTPM
Amygdala
nTPM: 621.9
2695 Female, age 67, right hemisphere 1028.4
2814 Male, age 76, right hemisphere 779.1
2514 Male, age 75, right hemisphere 474.0
2517 Female, age 94, left hemisphere 419.1
1987 Female, age 91, left hemisphere 408.9
Basal amygdala
nTPM: 444.4
2609 Male, age 75, right hemisphere 623.5
1955 Male, age 76, both hemispheres 499.7
2110 Male, age 80, left hemisphere 466.2
2685 Female, age 94, left hemisphere 383.8
2827 Female, age 67, right hemisphere 377.6
2243 Female, age 91, right hemisphere 315.6
Central amygdala
nTPM: 497.0
1905 Male, age 76, both hemispheres 695.4
2515 Male, age 75, right hemisphere 534.9
2826 Female, age 94, left hemisphere 468.8
2701 Female, age 91, right hemisphere 397.0
2239 Male, age 80, left hemisphere 388.9
Corticomedial amygdala
nTPM: 364.5
2428 Male, age 75, right hemisphere 503.2
2829 Male, age 80, left hemisphere 407.4
2240 Male, age 76, both hemispheres 400.6
2429 Female, age 94, left hemisphere 312.2
2242 Female, age 91, right hemisphere 282.9
2535 Female, age 67, right hemisphere 280.5
Lateral amygdala
nTPM: 467.0
1883 Male, age 76, both hemispheres 580.2
2516 Male, age 75, right hemisphere 561.6
2256 Male, age 80, left hemisphere 476.8
2830 Female, age 67, right hemisphere 471.4
2255 Female, age 91, right hemisphere 380.3
2534 Female, age 94, left hemisphere 331.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

444.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 444.1
Samples: 152

Max nTPM: 947.9
Min nTPM: 55.5
Std nTPM: 135.5
Median nTPM: 428.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 947.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 863.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 758.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 748.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 724.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 713.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 697.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 684.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 639.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 638.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 637.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 632.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 630.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 624.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 623.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 620.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 618.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 617.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 617.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 612.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 611.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 595.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 593.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 586.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 586.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 579.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 577.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 566.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 565.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 556.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 549.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 539.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 536.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 532.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 530.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 530.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 525.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 521.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 516.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 516.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 515.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 514.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 511.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 508.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 504.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 500.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 497.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 496.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 494.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 493.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 491.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 488.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 482.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 476.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 470.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 467.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 463.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 462.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 461.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 459.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 459.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 458.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 457.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 457.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 452.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 452.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 451.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 450.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 447.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 444.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 444.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 438.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 437.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 436.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 432.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 429.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 427.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 423.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 421.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 420.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 420.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 418.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 414.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 413.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 411.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 409.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 403.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 401.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 401.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 397.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 394.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 392.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 390.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 386.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 384.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 382.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 381.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 379.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 376.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 376.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 374.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 372.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 370.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 370.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 370.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 368.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 367.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 362.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 361.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 361.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 360.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 359.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 352.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 352.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 351.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 351.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 349.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 349.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 346.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 346.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 346.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 346.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 340.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 339.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 335.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 335.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 332.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 328.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 327.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 327.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 321.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 315.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 315.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 314.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 312.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 302.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 295.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 293.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 281.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 280.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 272.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 270.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 263.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 260.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 255.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 255.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 237.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 234.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 230.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 193.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 55.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

642.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 642.0
FF:10151-102I7 76 years, female 642.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.4
Pig sample Sample description nTPM
Amygdala
nTPM: 140.4
Samples: 4

Max nTPM: 195.1
Min nTPM: 73.2
Sample A Female 139.3
Sample B Female 195.1
Sample C Male 153.8
Sample D Male 73.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 242.8
Samples: 4

Max nTPM: 316.1
Min nTPM: 204.5
Sample A Male 204.5
Sample B Male 218.1
Sample C Female 316.1
Sample D Female 232.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 2.8
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 2.2
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 1.3

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