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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:453.7 nTPM
GTEx:453.7 nTPM
FANTOM5:323.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045617
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 453.7
Samples: 156

Max nTPM: 2470.8
Min nTPM: 79.7
Std nTPM: 433.6
Median nTPM: 300.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 2470.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 2116.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2036.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1803.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1656.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1644.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1503.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1491.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1432.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1321.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1282.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1261.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1210.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1181.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1173.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 992.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 990.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 860.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 822.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 797.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 794.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 778.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 754.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 723.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 722.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 715.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 705.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 705.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 701.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 690.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 676.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 660.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 638.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 624.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 616.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 592.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 586.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 577.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 572.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 554.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 533.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 531.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 517.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 512.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 504.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 488.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 486.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 484.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 462.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 461.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 442.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 424.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 423.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 410.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 406.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 406.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 399.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 395.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 392.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 386.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 383.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 382.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 381.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 380.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 368.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 368.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 363.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 356.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 348.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 347.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 336.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 335.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 332.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 331.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 324.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 324.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 318.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 305.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 295.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 292.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 289.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 287.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 285.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 285.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 280.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 278.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 273.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 263.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 258.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 249.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 248.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 243.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 242.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 242.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 240.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 238.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 234.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 226.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 226.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 225.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 220.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 216.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 216.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 214.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 212.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 209.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 204.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 201.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 199.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 194.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 192.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 191.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 186.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 185.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 179.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 175.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 171.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 168.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 167.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 164.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 164.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 162.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 160.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 157.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 150.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 149.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 148.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 145.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 142.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 141.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 137.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 137.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 132.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 127.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 127.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 124.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 123.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 123.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 119.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 118.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 116.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 116.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 114.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 108.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 108.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 107.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 103.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 99.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 99.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 98.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 95.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 93.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 92.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 90.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 79.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 79.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

323.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 323.0
FF:10204-103F6 68 years, female 323.0

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