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CSRP1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:488.2 nTPM
HPA:179.3 nTPM
GTEx:488.2 nTPM
FANTOM5:635.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045617
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.3
overview
Male, age 65
Small intestine sample 232
nTPM: 89.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 199.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 218.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 209.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 488.2
Samples: 187

Max nTPM: 4239.9
Min nTPM: 65.5
Std nTPM: 679.2
Median nTPM: 181.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4239.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2832.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2779.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2541.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2512.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2381.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2367.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2338.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2142.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2130.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2020.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1920.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1902.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1798.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1767.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1664.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1586.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1565.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1535.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1498.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1441.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1418.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1412.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1360.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1298.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1127.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1091.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1069.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1069.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1010.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1010.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 919.0
GTEX-1192X-2526-SM-59868 50-59 years, male 849.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 831.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 830.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 748.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 730.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 687.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 683.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 634.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 610.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 517.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 509.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 503.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 487.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 445.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 413.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 411.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 372.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 363.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 360.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 354.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 340.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 337.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 334.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 325.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 316.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 313.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 305.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 302.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 284.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 276.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 274.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 272.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 270.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 263.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 261.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 245.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 243.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 239.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 237.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 220.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 219.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 218.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 212.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 210.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 208.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 208.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 207.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 203.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 202.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 199.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 196.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 195.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 193.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 192.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 189.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 189.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 189.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 188.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 188.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 187.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 184.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 181.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 181.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 179.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 178.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 178.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 172.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 171.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 167.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 164.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 163.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 161.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 161.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 160.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 160.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 160.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 158.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 157.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 156.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 155.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 155.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 155.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 155.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 154.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 153.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 152.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 151.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 149.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 149.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 149.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 148.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 145.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 144.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 143.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 142.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 141.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 140.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 140.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 139.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 139.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 139.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 135.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 135.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 133.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 132.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 131.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 131.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 131.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 130.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 130.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 129.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 129.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 129.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 127.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 125.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 123.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 123.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 122.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 122.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 121.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 121.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 120.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 119.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 119.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 119.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 119.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 117.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 117.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 117.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 117.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 115.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 113.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 112.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 112.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 112.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 111.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 106.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 105.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 102.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 100.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 100.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 99.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 97.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 96.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 96.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 96.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 95.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 95.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 93.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 88.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 88.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 87.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 83.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 70.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 65.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

635.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 635.4
FF:10024-101D6 15,40,85 years, mixed 635.4

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