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CSRP1
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  • CSRP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:537.1 nTPM
FANTOM5:617.3 Scaled Tags Per Million
Pig:145.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045617
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

537.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 537.1
Samples: 246

Max nTPM: 1242.5
Min nTPM: 118.6
Std nTPM: 196.5
Median nTPM: 511.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1242.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1198.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1183.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1101.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1093.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1030.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1028.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1006.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 954.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 949.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 937.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 935.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 925.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 915.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 911.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 855.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 854.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 854.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 841.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 828.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 822.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 799.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 798.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 791.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 789.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 788.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 782.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 779.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 763.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 762.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 748.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 745.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 742.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 741.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 740.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 740.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 732.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 725.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 724.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 713.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 712.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 708.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 703.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 693.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 692.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 680.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 674.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 672.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 670.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 664.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 663.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 660.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 657.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 655.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 653.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 652.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 648.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 647.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 646.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 645.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 641.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 638.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 638.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 638.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 634.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 634.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 631.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 631.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 624.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 624.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 623.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 622.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 620.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 619.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 619.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 616.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 612.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 612.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 611.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 606.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 605.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 604.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 604.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 597.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 594.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 591.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 589.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 588.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 580.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 577.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 575.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 573.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 572.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 571.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 565.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 561.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 561.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 560.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 556.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 554.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 553.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 552.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 551.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 550.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 548.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 545.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 538.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 532.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 527.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 523.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 523.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 520.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 518.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 516.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 516.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 514.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 513.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 513.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 513.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 512.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 512.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 512.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 511.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 511.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 507.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 507.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 507.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 502.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 502.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 501.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 501.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 498.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 493.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 491.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 489.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 487.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 487.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 485.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 484.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 484.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 482.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 481.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 480.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 478.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 476.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 476.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 474.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 473.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 473.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 471.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 467.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 463.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 463.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 461.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 456.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 455.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 454.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 448.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 446.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 442.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 440.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 439.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 438.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 436.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 435.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 434.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 433.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 432.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 430.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 429.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 428.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 427.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 426.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 425.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 425.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 422.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 421.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 416.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 415.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 404.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 403.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 402.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 401.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 399.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 395.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 392.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 392.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 391.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 391.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 388.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 386.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 386.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 382.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 382.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 380.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 377.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 375.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 369.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 368.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 358.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 356.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 350.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 347.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 347.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 346.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 343.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 343.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 341.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 339.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 337.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 337.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 336.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 335.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 333.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 327.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 323.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 321.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 318.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 308.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 303.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 300.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 299.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 299.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 299.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 297.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 297.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 293.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 292.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 291.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 291.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 285.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 285.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 282.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 280.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 277.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 274.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 270.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 268.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 267.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 251.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 245.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 238.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 231.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 181.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 137.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 118.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

617.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 617.3
FF:10164-103B2 76 years, female 617.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.2
Pig sample Sample description nTPM
Caudate
nTPM: 145.2
Samples: 4

Max nTPM: 172.6
Min nTPM: 128.1
Sample A Female 131.2
Sample B Female 148.9
Sample C Male 172.6
Sample D Male 128.1

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