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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:221.9 nTPM
HPA Brain:80.3 nTPM
GTEx:221.9 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:49.8 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.3
Sample id Sample description nTPM
Amygdala
nTPM: 80.3
2814 Male, age 76, right hemisphere 110.7
1987 Female, age 91, left hemisphere 80.1
2517 Female, age 94, left hemisphere 73.6
2695 Female, age 67, right hemisphere 70.2
2514 Male, age 75, right hemisphere 67.0
Basal amygdala
nTPM: 70.9
2243 Female, age 91, right hemisphere 80.1
2609 Male, age 75, right hemisphere 79.1
2685 Female, age 94, left hemisphere 75.7
2110 Male, age 80, left hemisphere 72.8
1955 Male, age 76, both hemispheres 71.4
2827 Female, age 67, right hemisphere 46.3
Central amygdala
nTPM: 79.4
2826 Female, age 94, left hemisphere 100.2
1905 Male, age 76, both hemispheres 92.2
2239 Male, age 80, left hemisphere 73.8
2515 Male, age 75, right hemisphere 70.7
2701 Female, age 91, right hemisphere 60.1
Corticomedial amygdala
nTPM: 78.5
2829 Male, age 80, left hemisphere 91.2
2242 Female, age 91, right hemisphere 90.7
2428 Male, age 75, right hemisphere 82.3
2429 Female, age 94, left hemisphere 76.5
2535 Female, age 67, right hemisphere 67.1
2240 Male, age 76, both hemispheres 63.2
Lateral amygdala
nTPM: 67.3
1883 Male, age 76, both hemispheres 99.7
2534 Female, age 94, left hemisphere 83.9
2516 Male, age 75, right hemisphere 69.0
2255 Female, age 91, right hemisphere 53.8
2256 Male, age 80, left hemisphere 50.9
2830 Female, age 67, right hemisphere 46.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 221.9
Samples: 152

Max nTPM: 748.5
Min nTPM: 75.8
Std nTPM: 98.4
Median nTPM: 199.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 748.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 603.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 585.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 531.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 492.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 449.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 397.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 391.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 384.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 374.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 368.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 362.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 347.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 328.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 324.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 315.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 313.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 311.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 309.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 309.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 307.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 306.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 300.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 298.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 295.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 293.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 276.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 276.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 274.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 273.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 273.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 270.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 270.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 269.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 267.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 265.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 264.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 260.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 260.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 256.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 249.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 248.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 246.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 245.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 244.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 244.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 244.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 241.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 239.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 238.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 234.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 233.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 232.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 232.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 232.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 223.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 223.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 222.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 221.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 221.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 220.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 219.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 216.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 215.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 214.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 214.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 212.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 209.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 209.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 208.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 204.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 203.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 203.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 201.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 201.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 198.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 197.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 195.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 193.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 193.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 192.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 191.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 191.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 191.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 186.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 183.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 182.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 180.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 180.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 180.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 179.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 178.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 176.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 174.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 173.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 173.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 171.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 169.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 169.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 168.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 168.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 166.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 164.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 164.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 164.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 164.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 163.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 162.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 162.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 160.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 156.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 154.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 149.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 149.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 145.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 144.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 143.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 141.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 139.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 134.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 133.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 130.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 125.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 125.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 125.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 123.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 120.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 120.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 116.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 113.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 105.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 75.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.0
FF:10151-102I7 76 years, female 28.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.8
Pig sample Sample description nTPM
Amygdala
nTPM: 49.8
Samples: 4

Max nTPM: 67.0
Min nTPM: 40.7
Sample A Female 67.0
Sample B Female 40.7
Sample C Male 46.2
Sample D Male 45.2

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