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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:145.8 nTPM
HPA Brain:192.1 nTPM
GTEx:145.8 nTPM
FANTOM5:160.8 Scaled Tags Per Million
Pig:103.1 nTPM
Mouse:341.9 nTPM
Allen mouse:31.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.1
Sample id Sample description nTPM
Amygdala
nTPM: 188.8
1987 Female, age 91, left hemisphere 205.6
2514 Male, age 75, right hemisphere 205.4
2814 Male, age 76, right hemisphere 193.3
2517 Female, age 94, left hemisphere 183.2
2695 Female, age 67, right hemisphere 156.6
Basal amygdala
nTPM: 152.9
2609 Male, age 75, right hemisphere 179.7
1955 Male, age 76, both hemispheres 168.7
2110 Male, age 80, left hemisphere 167.5
2243 Female, age 91, right hemisphere 144.5
2685 Female, age 94, left hemisphere 140.0
2827 Female, age 67, right hemisphere 116.8
Central amygdala
nTPM: 192.1
2515 Male, age 75, right hemisphere 236.6
2826 Female, age 94, left hemisphere 221.8
1905 Male, age 76, both hemispheres 202.6
2239 Male, age 80, left hemisphere 168.4
2701 Female, age 91, right hemisphere 130.9
Corticomedial amygdala
nTPM: 145.8
2428 Male, age 75, right hemisphere 219.5
2829 Male, age 80, left hemisphere 147.1
2242 Female, age 91, right hemisphere 139.0
2429 Female, age 94, left hemisphere 134.5
2240 Male, age 76, both hemispheres 124.9
2535 Female, age 67, right hemisphere 109.5
Lateral amygdala
nTPM: 171.5
2534 Female, age 94, left hemisphere 201.1
2516 Male, age 75, right hemisphere 187.0
1883 Male, age 76, both hemispheres 178.2
2256 Male, age 80, left hemisphere 165.8
2255 Female, age 91, right hemisphere 157.3
2830 Female, age 67, right hemisphere 139.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 145.8
Samples: 152

Max nTPM: 394.9
Min nTPM: 72.8
Std nTPM: 47.8
Median nTPM: 134.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 394.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 324.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 316.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 275.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 253.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 253.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 249.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 248.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 247.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 247.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 245.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 223.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 200.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 200.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 196.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 193.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 192.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 192.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 192.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 186.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 185.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 185.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 185.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 179.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 176.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 176.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 175.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 172.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 169.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 169.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 166.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 164.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 163.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 162.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 162.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 160.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 159.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 158.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 158.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 157.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 152.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 152.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 152.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 150.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 150.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 149.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 148.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 147.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 147.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 147.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 140.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 139.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 137.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 137.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 137.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 137.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 135.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 135.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 135.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 132.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 132.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 131.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 130.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 127.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 125.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 125.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 124.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 123.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 123.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 123.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 122.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 122.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 121.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 120.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 120.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 120.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 119.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 119.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 118.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 117.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 117.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 117.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 112.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 112.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 112.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 112.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 111.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 111.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 109.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 107.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 107.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 106.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 104.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 99.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 98.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 94.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 94.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 92.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 91.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 91.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

160.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 160.8
FF:10151-102I7 76 years, female 160.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Pig sample Sample description nTPM
Amygdala
nTPM: 103.1
Samples: 4

Max nTPM: 125.3
Min nTPM: 92.5
Sample A Female 125.3
Sample B Female 99.4
Sample C Male 92.5
Sample D Male 95.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.0
Samples: 4

Max nTPM: 371.3
Min nTPM: 330.9
Sample A Male 371.3
Sample B Male 330.9
Sample C Female 333.2
Sample D Female 332.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.7
293263 Antisense, RP_040617_01_A10, Mouse strain C57BL/6J (56 days, male) 31.7

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