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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:182.1 nTPM
HPA:98.2 nTPM
GTEx:182.1 nTPM
FANTOM5:302.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA068843Antibody CAB004587
Glandular cells LowMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.2
overview
Male, age 65
Small intestine sample 232
nTPM: 111.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 86.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 102.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 92.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 182.1
Samples: 187

Max nTPM: 344.0
Min nTPM: 107.2
Std nTPM: 50.3
Median nTPM: 168.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 344.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 318.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 315.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 310.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 304.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 295.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 292.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 289.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 286.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 282.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 279.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 277.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 270.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 266.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 264.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 263.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 263.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 262.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 261.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 260.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 260.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 259.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 251.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 251.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 248.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 248.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 246.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 244.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 243.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 242.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 239.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 237.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 233.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 230.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 229.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 228.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 228.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 219.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 217.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 216.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 213.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 210.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 209.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 209.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 208.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 208.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 206.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 205.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 205.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 204.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 203.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 202.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 202.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 200.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 200.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 200.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 199.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 199.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 199.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 198.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 197.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 196.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 196.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 193.5
GTEX-1192X-2526-SM-59868 50-59 years, male 193.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 192.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 192.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 192.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 190.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 188.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 188.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 188.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 185.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 184.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 182.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 181.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 181.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 180.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 180.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 178.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 178.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 178.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 177.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 177.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 176.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 176.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 176.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 174.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 172.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 172.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 171.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 170.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 169.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 168.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 168.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 168.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 165.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 164.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 162.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 162.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 162.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 162.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 161.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 161.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 161.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 161.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 160.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 160.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 160.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 160.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 160.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 158.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 158.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 158.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 158.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 158.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 158.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 156.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 155.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 155.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 154.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 154.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 154.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 154.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 153.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 152.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 152.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 152.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 152.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 151.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 150.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 150.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 149.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 149.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 148.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 147.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 146.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 145.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 145.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 145.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 144.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 144.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 143.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 142.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 142.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 141.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 140.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 140.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 139.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 139.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 138.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 138.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 138.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 137.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 137.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 136.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 135.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 135.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 134.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 133.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 133.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 133.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 132.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 132.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 132.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 131.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 130.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 128.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 127.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 127.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 125.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 123.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 122.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 120.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 120.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 118.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 118.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 118.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 117.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 116.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 115.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 112.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 111.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 110.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 108.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 107.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 302.4
FF:10024-101D6 15,40,85 years, mixed 302.4

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