MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.9 nTPM
HPA Brain:96.3 nTPM
GTEx:128.9 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:136.3 nTPM
Mouse:259.9 nTPM
Allen mouse:18.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.3
2411 Female, age 72, unknown 89.3
1870 Female, age 42, unknown 88.2
2586 Male, age 75, left hemisphere 85.7
1833 Male, age 53, unknown 82.3
2019 Male, age 18, unknown 81.5
1827 Male, age 72, unknown 81.4
2828 Female, age 72, unknown 79.2
1830 Male, age 51, unknown 77.9
2666 Male, age 74, left hemisphere 74.6
2219 Male, age 76, both hemispheres 62.5
Dorsal raphe nucleus
nTPM: 85.8
2298 Female, age 72, unknown 94.9
2750 Male, age 76, both hemispheres 93.4
2047 Male, age 72, unknown 85.9
1828 Male, age 53, unknown 81.4
2016 Female, age 72, unknown 73.3
Inferior colliculus
nTPM: 76.6
2097 Female, age 72, unknown 83.9
1890 Male, age 53, unknown 78.0
1848 Female, age 42, unknown 76.1
2849 Male, age 72, unknown 68.6
Median raphe nucleus
nTPM: 96.3
2220 Male, age 76, midline 96.3
Periaquaductal grey, anterior
nTPM: 84.6
2502 Female, age 75, unknown 90.2
1947 Male, age 18, unknown 88.8
1795 Male, age 51, unknown 74.7
Periaquaductal grey, dorsal
nTPM: 80.3
2850 Male, age 76, both hemispheres 94.0
1831 Male, age 72, unknown 76.3
2464 Female, age 72, unknown 76.1
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 82.5
2140 Male, age 76, both hemispheres 85.4
2272 Male, age 74, both hemispheres 82.9
2053 Male, age 18, unknown 79.1
Pretectal area
nTPM: 82.9
1817 Female, age 42, unknown 91.9
1815 Male, age 53, unknown 90.1
2273 Male, age 74, both hemispheres 86.1
2316 Male, age 76, right hemisphere 85.7
1816 Male, age 51, unknown 85.4
2007 Male, age 72, unknown 82.7
2224 Female, age 72, unknown 81.7
1944 Female, age 72, unknown 78.6
2667 Female, age 75, unknown 78.2
2825 Male, age 18, unknown 76.8
2407 Male, age 75, both hemispheres 74.9
Red nucleus
nTPM: 86.5
1821 Female, age 72, unknown 97.8
1865 Male, age 51, unknown 97.0
1904 Male, age 53, unknown 95.5
1954 Female, age 42, unknown 93.0
2725 Female, age 75, unknown 91.7
2823 Male, age 76, right hemisphere 85.8
2769 Male, age 72, unknown 84.0
2227 Male, age 72, unknown 83.8
2785 Male, age 18, unknown 82.8
2503 Female, age 72, unknown 79.8
2584 Male, age 75, left hemisphere 74.5
2588 Male, age 74, left hemisphere 72.4
Substantia nigra
nTPM: 92.2
1851 Male, age 51, unknown 105.3
1916 Female, age 42, unknown 105.2
2241 Male, age 72, unknown 100.8
2665 Male, age 74, both hemispheres 93.4
2409 Female, age 72, unknown 91.9
2699 Male, age 18, unknown 91.4
1889 Female, age 72, unknown 87.6
2590 Female, age 75, unknown 86.9
2583 Male, age 75, right hemisphere 81.4
1941 Male, age 53, unknown 78.5
Superior colliculus
nTPM: 78.3
1913 Female, age 42, unknown 85.5
1995 Male, age 72, unknown 85.3
2261 Male, age 18, unknown 85.1
2587 Male, age 74, left hemisphere 81.8
1796 Male, age 53, unknown 80.8
2087 Female, age 72, unknown 77.2
2668 Female, age 75, unknown 76.6
1839 Male, age 51, unknown 74.5
1895 Male, age 76, right hemisphere 74.3
2664 Male, age 75, both hemispheres 62.2
Ventral tegmental area
nTPM: 90.0
1915 Female, age 42, unknown 94.2
2223 Female, age 72, unknown 92.3
2410 Female, age 72, unknown 91.7
2218 Male, age 76, both hemispheres 90.4
2021 Male, age 53, unknown 89.9
1942 Male, age 51, unknown 81.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 128.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.9
Samples: 139

Max nTPM: 341.6
Min nTPM: 73.3
Std nTPM: 48.5
Median nTPM: 110.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 341.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 302.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 291.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 278.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 261.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 261.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 248.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 244.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 227.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 215.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 212.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 127.1
Samples: 4

Max nTPM: 147.7
Min nTPM: 114.7
Sample A Female 147.7
Sample B Female 114.7
Sample C Male 121.4
Sample D Male 124.5
Midbrain
nTPM: 135.3
Samples: 4

Max nTPM: 213.3
Min nTPM: 98.3
Sample A Female 213.3
Sample B Female 112.2
Sample C Male 117.4
Sample D Male 98.3
Periaqueductal gray
nTPM: 100.6
Samples: 3

Max nTPM: 110.4
Min nTPM: 89.6
Sample B Female 101.9
Sample C Male 110.4
Sample D Male 89.6
Superior colliculi
nTPM: 136.3
Samples: 4

Max nTPM: 157.2
Min nTPM: 116.8
Sample A Female 157.2
Sample B Female 142.3
Sample C Male 128.7
Sample D Male 116.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 259.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.9
Samples: 4

Max nTPM: 265.2
Min nTPM: 246.8
Sample A Male 265.2
Sample B Male 262.6
Sample C Female 265.0
Sample D Female 246.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.8
68924419 Antisense, RP_050303_02_C11, Mouse strain C57BL/6J (56 days, male) 18.8

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