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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:141.4 nTPM
HPA Brain:108.6 nTPM
GTEx:141.4 nTPM
FANTOM5:41.7 Scaled Tags Per Million
Pig:164.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.7
1981 Female, age 72, midline 106.6
2565 Male, age 75, midline 89.5
2048 Male, age 55, midline 87.0
2816 Male, age 47, midline 76.7
2194 Female, age 79, both hemispheres 68.7
Cervical spinal cord, dorsal horn
nTPM: 106.2
2069 Male, age 47, both hemispheres 124.1
2173 Female, age 72, unknown 118.6
2296 Male, age 66, both hemispheres 109.0
2297 Male, age 75, both hemispheres 100.8
1877 Male, age 55, unknown 97.7
2721 Male, age 90, both hemispheres 87.3
Cervical spinal cord, ventral horn
nTPM: 108.6
2809 Male, age 90, both hemispheres 142.7
2098 Female, age 72, unknown 140.7
2480 Male, age 75, both hemispheres 126.0
2295 Male, age 66, both hemispheres 93.2
2068 Male, age 55, unknown 83.8
2820 Female, age 79, both hemispheres 65.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.4
Samples: 159

Max nTPM: 291.5
Min nTPM: 80.2
Std nTPM: 41.8
Median nTPM: 130.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 283.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 273.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 266.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 254.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 253.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 236.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 233.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 231.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 230.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 226.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 226.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 215.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 210.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 208.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 203.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 200.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 199.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 189.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 187.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 181.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 179.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 174.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 172.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 171.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 170.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 169.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 169.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 165.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 163.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 163.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 163.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 157.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 157.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 156.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 156.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 155.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 154.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 154.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 153.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 152.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 151.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 150.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 149.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 147.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 146.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 141.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 141.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 140.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 140.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 139.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 138.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 138.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 138.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 138.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 137.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 137.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 137.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 137.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 136.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 136.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 136.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 136.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 135.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 135.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 134.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 134.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 134.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 134.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 134.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 133.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 132.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 131.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 130.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 130.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 129.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 129.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 128.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 128.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 128.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 127.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 127.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 126.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 126.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 123.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 123.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 123.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 122.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 122.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 121.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 121.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 120.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 120.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 120.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 120.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 119.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 118.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 118.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 118.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 118.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 118.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 117.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 117.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 116.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 116.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 115.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 115.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 114.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 113.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 113.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 113.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 112.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 112.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 112.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 110.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 110.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 109.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 109.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 109.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 109.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 108.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 107.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 107.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 105.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 105.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 103.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 101.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 100.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 96.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 96.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 87.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 83.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 83.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 81.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 80.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.7
FF:10159-103A6 76 years, female 44.6
FF:10181-103D1 60 years, female 38.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 164.3
Samples: 4

Max nTPM: 217.9
Min nTPM: 137.1
Sample A Female 137.1
Sample B Female 153.5
Sample C Male 217.9
Sample D Male 148.5
Ventral spinal cord
nTPM: 164.5
Samples: 4

Max nTPM: 172.7
Min nTPM: 151.5
Sample A Female 151.5
Sample B Female 161.6
Sample C Male 172.2
Sample D Male 172.7

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