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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:84.7 nTPM
HPA Brain:176.5 nTPM
GTEx:84.7 nTPM
FANTOM5:162.6 Scaled Tags Per Million
Pig:105.2 nTPM
Mouse:90.1 nTPM
Allen mouse:14.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.5
Sample id Sample description nTPM
Amygdala
nTPM: 176.5
2695 Female, age 67, right hemisphere 314.3
1987 Female, age 91, left hemisphere 143.9
2514 Male, age 75, right hemisphere 143.8
2814 Male, age 76, right hemisphere 143.2
2517 Female, age 94, left hemisphere 137.5
Basal amygdala
nTPM: 168.0
2609 Male, age 75, right hemisphere 215.8
2243 Female, age 91, right hemisphere 187.0
2827 Female, age 67, right hemisphere 170.0
2685 Female, age 94, left hemisphere 152.8
1955 Male, age 76, both hemispheres 151.0
2110 Male, age 80, left hemisphere 131.1
Central amygdala
nTPM: 176.1
2515 Male, age 75, right hemisphere 226.7
2701 Female, age 91, right hemisphere 184.3
2239 Male, age 80, left hemisphere 165.6
2826 Female, age 94, left hemisphere 156.3
1905 Male, age 76, both hemispheres 147.7
Corticomedial amygdala
nTPM: 164.1
2242 Female, age 91, right hemisphere 194.3
2829 Male, age 80, left hemisphere 186.1
2428 Male, age 75, right hemisphere 185.1
2535 Female, age 67, right hemisphere 157.7
2240 Male, age 76, both hemispheres 133.3
2429 Female, age 94, left hemisphere 127.9
Lateral amygdala
nTPM: 162.9
2830 Female, age 67, right hemisphere 197.0
2516 Male, age 75, right hemisphere 187.8
1883 Male, age 76, both hemispheres 159.3
2255 Female, age 91, right hemisphere 153.4
2256 Male, age 80, left hemisphere 145.7
2534 Female, age 94, left hemisphere 134.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.7
Samples: 152

Max nTPM: 148.4
Min nTPM: 17.5
Std nTPM: 23.5
Median nTPM: 83.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 143.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 135.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 122.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 117.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 117.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 117.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 116.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 113.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 113.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 112.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 111.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 108.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 107.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 105.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 103.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 102.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 101.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 101.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 98.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 97.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 96.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 95.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 94.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 92.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 92.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 92.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 90.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 89.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 89.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 88.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 88.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 87.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 87.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 86.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 86.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 84.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 83.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 83.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 82.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 81.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 80.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 80.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 79.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 79.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 78.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 77.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 77.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 77.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 76.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 75.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 75.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 74.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 74.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 74.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 74.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 72.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 72.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 72.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 71.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 70.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 70.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 69.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 68.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 68.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 68.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 67.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 67.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 66.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 64.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 63.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 63.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 63.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 62.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 62.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 62.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 58.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 57.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 55.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 55.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 55.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 52.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 50.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 46.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 45.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 45.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 42.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 162.6
FF:10151-102I7 76 years, female 162.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.2
Pig sample Sample description nTPM
Amygdala
nTPM: 105.2
Samples: 4

Max nTPM: 137.2
Min nTPM: 79.9
Sample A Female 137.2
Sample B Female 79.9
Sample C Male 102.8
Sample D Male 100.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 90.1
Samples: 4

Max nTPM: 97.5
Min nTPM: 82.6
Sample A Male 97.5
Sample B Male 82.6
Sample C Female 87.7
Sample D Female 92.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.0
68845287 Antisense, RP_050224_01_E03, Mouse strain C57BL/6J (56 days, male) 15.2
71358662 Antisense, RP_050725_03_F12, Mouse strain C57BL/6J (56 days, male) 12.7

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