MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.9 nTPM
HPA Brain:216.4 nTPM
GTEx:90.9 nTPM
FANTOM5:96.2 Scaled Tags Per Million
Pig:132.6 nTPM
Mouse:75.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 216.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 197.5
2586 Male, age 75, left hemisphere 387.3
2828 Female, age 72, unknown 274.7
2666 Male, age 74, left hemisphere 249.6
1827 Male, age 72, unknown 183.8
1870 Female, age 42, unknown 168.1
1833 Male, age 53, unknown 154.3
2219 Male, age 76, both hemispheres 153.6
1830 Male, age 51, unknown 151.2
2411 Female, age 72, unknown 150.2
2019 Male, age 18, unknown 102.5
Dorsal raphe nucleus
nTPM: 199.1
1828 Male, age 53, unknown 236.2
2047 Male, age 72, unknown 234.5
2016 Female, age 72, unknown 209.6
2298 Female, age 72, unknown 164.6
2750 Male, age 76, both hemispheres 150.5
Inferior colliculus
nTPM: 153.8
2849 Male, age 72, unknown 170.2
1848 Female, age 42, unknown 167.6
1890 Male, age 53, unknown 154.4
2097 Female, age 72, unknown 123.1
Median raphe nucleus
nTPM: 163.0
2220 Male, age 76, midline 163.0
Periaquaductal grey, anterior
nTPM: 186.5
1795 Male, age 51, unknown 209.9
1947 Male, age 18, unknown 204.6
2502 Female, age 75, unknown 145.1
Periaquaductal grey, dorsal
nTPM: 167.3
1840 Male, age 53, unknown 186.4
1831 Male, age 72, unknown 170.1
2850 Male, age 76, both hemispheres 163.2
2464 Female, age 72, unknown 149.7
Periaquaductal grey, lateral
nTPM: 162.1
2053 Male, age 18, unknown 214.0
2140 Male, age 76, both hemispheres 155.9
2272 Male, age 74, both hemispheres 116.3
Pretectal area
nTPM: 161.5
2825 Male, age 18, unknown 217.7
2407 Male, age 75, both hemispheres 181.6
1815 Male, age 53, unknown 170.5
2667 Female, age 75, unknown 170.3
1944 Female, age 72, unknown 168.4
1817 Female, age 42, unknown 167.7
1816 Male, age 51, unknown 156.5
2224 Female, age 72, unknown 150.2
2007 Male, age 72, unknown 142.5
2316 Male, age 76, right hemisphere 138.3
2273 Male, age 74, both hemispheres 113.0
Red nucleus
nTPM: 182.5
2584 Male, age 75, left hemisphere 248.6
2503 Female, age 72, unknown 212.9
2588 Male, age 74, left hemisphere 212.7
2725 Female, age 75, unknown 196.6
2769 Male, age 72, unknown 190.6
2227 Male, age 72, unknown 182.8
1954 Female, age 42, unknown 181.2
1821 Female, age 72, unknown 167.4
2823 Male, age 76, right hemisphere 167.3
1865 Male, age 51, unknown 160.5
1904 Male, age 53, unknown 158.8
2785 Male, age 18, unknown 110.7
Substantia nigra
nTPM: 216.4
2699 Male, age 18, unknown 277.2
2583 Male, age 75, right hemisphere 264.3
1916 Female, age 42, unknown 245.2
2665 Male, age 74, both hemispheres 242.2
1851 Male, age 51, unknown 210.8
2409 Female, age 72, unknown 198.7
2590 Female, age 75, unknown 198.6
2241 Male, age 72, unknown 197.9
1889 Female, age 72, unknown 168.9
1941 Male, age 53, unknown 160.8
Superior colliculus
nTPM: 171.2
2664 Male, age 75, both hemispheres 284.7
1796 Male, age 53, unknown 198.6
2668 Female, age 75, unknown 192.8
2261 Male, age 18, unknown 179.3
1839 Male, age 51, unknown 173.1
2087 Female, age 72, unknown 159.4
2587 Male, age 74, left hemisphere 144.7
1995 Male, age 72, unknown 135.8
1913 Female, age 42, unknown 132.5
1895 Male, age 76, right hemisphere 110.8
Ventral tegmental area
nTPM: 186.7
1942 Male, age 51, unknown 218.5
2410 Female, age 72, unknown 201.7
1915 Female, age 42, unknown 190.1
2021 Male, age 53, unknown 189.7
2218 Male, age 76, both hemispheres 168.9
2223 Female, age 72, unknown 151.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.9
Samples: 139

Max nTPM: 232.6
Min nTPM: 19.0
Std nTPM: 39.7
Median nTPM: 83.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 232.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 207.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 187.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 185.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 156.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 155.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 154.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 154.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 150.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 148.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 148.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.2
FF:10158-103A5 76 years, female 96.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.6
Samples: 4

Max nTPM: 158.7
Min nTPM: 97.3
Sample A Female 134.1
Sample B Female 97.3
Sample C Male 158.7
Sample D Male 140.2
Midbrain
nTPM: 125.8
Samples: 4

Max nTPM: 208.3
Min nTPM: 83.2
Sample A Female 83.2
Sample B Female 104.3
Sample C Male 208.3
Sample D Male 107.2
Periaqueductal gray
nTPM: 95.4
Samples: 3

Max nTPM: 108.1
Min nTPM: 75.7
Sample B Female 108.1
Sample C Male 102.5
Sample D Male 75.7
Superior colliculi
nTPM: 118.6
Samples: 4

Max nTPM: 167.4
Min nTPM: 61.8
Sample A Female 114.8
Sample B Female 61.8
Sample C Male 167.4
Sample D Male 130.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.5
Samples: 4

Max nTPM: 80.3
Min nTPM: 71.4
Sample A Male 80.3
Sample B Male 75.8
Sample C Female 71.4
Sample D Female 74.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
71358662 Antisense, RP_050725_03_F12, Mouse strain C57BL/6J (56 days, male) 6.8
68845287 Antisense, RP_050224_01_E03, Mouse strain C57BL/6J (56 days, male) 6.3

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