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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:572.7 nTPM
HPA Brain:500.9 nTPM
GTEx:572.7 nTPM
FANTOM5:1654.8 Scaled Tags Per Million
Pig:426.9 nTPM
Mouse:767.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

500.9
Sample id Sample description nTPM
Amygdala
nTPM: 271.8
2517 Female, age 94, left hemisphere 438.9
2814 Male, age 76, right hemisphere 264.2
2514 Male, age 75, right hemisphere 233.0
2695 Female, age 67, right hemisphere 226.3
1987 Female, age 91, left hemisphere 196.7
Basal amygdala
nTPM: 500.9
2827 Female, age 67, right hemisphere 687.3
2685 Female, age 94, left hemisphere 667.7
2110 Male, age 80, left hemisphere 583.6
1955 Male, age 76, both hemispheres 412.4
2609 Male, age 75, right hemisphere 338.3
2243 Female, age 91, right hemisphere 316.1
Central amygdala
nTPM: 401.1
2826 Female, age 94, left hemisphere 839.4
2239 Male, age 80, left hemisphere 464.9
2515 Male, age 75, right hemisphere 294.8
1905 Male, age 76, both hemispheres 218.4
2701 Female, age 91, right hemisphere 187.8
Corticomedial amygdala
nTPM: 416.8
2535 Female, age 67, right hemisphere 617.8
2829 Male, age 80, left hemisphere 576.9
2429 Female, age 94, left hemisphere 407.9
2240 Male, age 76, both hemispheres 379.2
2428 Male, age 75, right hemisphere 296.2
2242 Female, age 91, right hemisphere 222.7
Lateral amygdala
nTPM: 494.2
2534 Female, age 94, left hemisphere 826.2
2256 Male, age 80, left hemisphere 824.2
2830 Female, age 67, right hemisphere 402.4
2516 Male, age 75, right hemisphere 327.1
1883 Male, age 76, both hemispheres 298.8
2255 Female, age 91, right hemisphere 286.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

572.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 572.7
Samples: 152

Max nTPM: 1731.2
Min nTPM: 77.7
Std nTPM: 281.8
Median nTPM: 514.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1731.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1688.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1511.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1318.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1175.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1136.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1133.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1099.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1062.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1042.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 965.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 955.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 940.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 930.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 915.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 903.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 899.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 892.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 878.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 860.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 852.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 845.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 837.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 837.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 837.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 835.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 820.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 800.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 799.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 773.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 762.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 735.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 731.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 725.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 725.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 719.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 717.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 709.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 698.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 690.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 688.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 679.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 678.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 675.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 662.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 660.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 657.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 656.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 655.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 647.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 647.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 633.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 633.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 632.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 632.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 626.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 626.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 623.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 620.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 614.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 613.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 610.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 604.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 601.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 575.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 570.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 569.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 552.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 552.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 543.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 542.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 524.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 524.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 522.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 521.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 515.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 513.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 511.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 509.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 509.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 509.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 506.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 503.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 499.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 483.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 481.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 480.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 475.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 473.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 473.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 468.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 467.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 465.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 465.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 461.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 456.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 454.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 445.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 442.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 441.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 437.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 431.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 428.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 424.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 409.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 407.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 405.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 402.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 397.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 395.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 388.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 386.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 386.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 380.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 380.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 374.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 368.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 367.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 348.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 337.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 332.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 332.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 331.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 331.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 329.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 328.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 321.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 315.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 310.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 308.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 305.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 301.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 293.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 280.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 269.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 263.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 261.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 256.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 253.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 247.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 241.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 218.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 218.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 211.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 211.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 206.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 199.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 192.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 189.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 186.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 185.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 77.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1654.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1654.8
FF:10151-102I7 76 years, female 1654.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.9
Pig sample Sample description nTPM
Amygdala
nTPM: 426.9
Samples: 4

Max nTPM: 609.3
Min nTPM: 276.6
Sample A Female 609.3
Sample B Female 449.3
Sample C Male 276.6
Sample D Male 372.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 767.2
Samples: 4

Max nTPM: 1078.7
Min nTPM: 550.0
Sample A Male 550.0
Sample B Male 778.1
Sample C Female 1078.7
Sample D Female 662.1

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