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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:347.3 nTPM
FANTOM5:801.9 Scaled Tags Per Million
Pig:349.9 nTPM
Mouse:325.4 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 198.3
2497 Male, age 66, unknown 242.0
2396 Male, age 61, right hemisphere 195.4
2032 Female, age 42, unknown 157.7
Centromedial thalamic nucleus
nTPM: 253.9
2401 Male, age 76, right hemisphere 264.2
2279 Female, age 85, left hemisphere 243.6
Habenula
nTPM: 347.3
1957 Male, age 80, both hemispheres 468.5
2203 Male, age 61, left hemisphere 392.0
2276 Male, age 66, unknown 292.1
2252 Male, age 62, unknown 236.4
Lateral geniculate body
nTPM: 184.4
2857 Male, age 74, right hemisphere 240.9
2106 Female, age 67, right hemisphere 228.8
1953 Male, age 62, unknown 188.9
2399 Male, age 61, left hemisphere 179.1
2659 Male, age 66, unknown 170.8
2035 Female, age 72, unknown 163.7
2841 Male, age 80, both hemispheres 155.5
2575 Female, age 94, right hemisphere 147.7
Lateral thalamic nuclei
nTPM: 254.0
1903 Male, age 76, left hemisphere 347.5
2661 Female, age 72, unknown 272.2
2765 Female, age 67, both hemispheres 243.3
2577 Male, age 74, both hemispheres 227.4
2573 Female, age 94, left hemisphere 179.8
Medial dorsal thalamic nucleus
nTPM: 293.1
2283 Male, age 80, right hemisphere 429.3
1930 Female, age 42, unknown 344.6
2492 Male, age 75, right hemisphere 344.1
2498 Male, age 66, unknown 321.9
1971 Male, age 61, right hemisphere 317.6
2026 Male, age 62, unknown 301.2
2576 Male, age 74, both hemispheres 274.9
2402 Female, age 67, both hemispheres 271.5
1810 Male, age 48, unknown 263.3
1859 Male, age 76, both hemispheres 258.0
2660 Female, age 72, unknown 238.8
2572 Female, age 94, right hemisphere 225.2
2039 Female, age 72, unknown 219.5
Medial geniculate body
nTPM: 272.3
2207 Male, age 80, right hemisphere 339.4
1811 Female, age 42, unknown 315.7
2571 Male, age 75, right hemisphere 309.2
2049 Male, age 76, both hemispheres 304.4
2217 Female, age 72, unknown 252.2
2657 Male, age 74, right hemisphere 225.5
2650 Female, age 94, left hemisphere 159.7
Nucleus reuniens
nTPM: 221.8
2210 Female, age 85, left hemisphere 239.4
2212 Female, age 67, left hemisphere 222.8
2205 Male, age 80, left hemisphere 203.2
Nucleus rhomboideus
nTPM: 270.9
2206 Male, age 80, both hemispheres 357.6
2280 Female, age 85, left hemisphere 286.7
2213 Female, age 67, left hemisphere 168.5
Posterior thalamic nucleus
nTPM: 241.3
2655 Male, age 74, right hemisphere 258.3
2495 Female, age 67, right hemisphere 251.4
2266 Male, age 76, right hemisphere 245.7
2649 Female, age 94, both hemispheres 209.8
Pulvinar
nTPM: 244.3
2582 Female, age 72, unknown 318.5
2496 Female, age 67, right hemisphere 287.6
2214 Male, age 76, right hemisphere 269.6
1929 Male, age 48, unknown 255.6
2724 Male, age 74, right hemisphere 252.5
1972 Male, age 62, unknown 236.7
2398 Male, age 61, left hemisphere 222.8
1899 Female, age 42, unknown 216.0
2499 Male, age 66, unknown 200.7
1932 Male, age 80, right hemisphere 183.5
Subthalamic nucleus
nTPM: 207.3
2124 Male, age 62, unknown 232.4
2216 Male, age 48, unknown 215.4
2275 Male, age 66, unknown 214.1
2282 Male, age 61, both hemispheres 209.2
2779 Female, age 42, unknown 207.7
2658 Male, age 74, both hemispheres 198.4
2056 Female, age 72, unknown 196.4
2406 Female, age 72, unknown 185.1
Ventral posterolateral thalamic nucleus
nTPM: 213.5
2197 Male, age 80, both hemispheres 285.3
2740 Male, age 76, right hemisphere 255.7
2578 Male, age 74, both hemispheres 218.3
2570 Male, age 75, right hemisphere 193.4
2397 Male, age 61, right hemisphere 179.4
2581 Female, age 72, unknown 148.8
Ventral posteromedial thalamic nucleus
nTPM: 267.4
2758 Male, age 80, both hemispheres 336.5
2202 Male, age 61, left hemisphere 284.8
2127 Male, age 76, right hemisphere 256.8
2281 Male, age 75, right hemisphere 250.1
2653 Male, age 74, both hemispheres 208.9
Ventral thalamic nuclei
nTPM: 235.6
1912 Female, age 42, unknown 387.9
2204 Male, age 80, both hemispheres 254.6
2652 Male, age 74, left hemisphere 245.1
2285 Male, age 62, unknown 233.1
1860 Male, age 76, both hemispheres 227.6
1845 Male, age 48, unknown 226.8
2291 Female, age 72, unknown 201.6
2580 Male, age 66, unknown 193.2
2858 Female, age 72, unknown 150.2
Zona incerta
nTPM: 232.9
2208 Male, age 80, right hemisphere 289.5
2215 Male, age 66, unknown 277.3
2403 Male, age 62, unknown 225.6
2822 Male, age 74, right hemisphere 207.8
2663 Female, age 72, unknown 164.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

801.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 801.9
FF:10154-103A1 76 years, female 801.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.9
Pig sample Sample description nTPM
Thalamus
nTPM: 349.9
Samples: 4

Max nTPM: 502.4
Min nTPM: 190.0
Sample A Female 502.4
Sample B Female 297.4
Sample C Male 409.7
Sample D Male 190.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 325.4
Samples: 4

Max nTPM: 405.0
Min nTPM: 271.6
Sample A Male 346.3
Sample B Male 278.6
Sample C Female 405.0
Sample D Female 271.6

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