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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:152.5 nTPM
HPA Brain:265.5 nTPM
GTEx:152.5 nTPM
FANTOM5:1259.3 Scaled Tags Per Million
Pig:171.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 147.2
2194 Female, age 79, both hemispheres 198.9
2565 Male, age 75, midline 162.3
1981 Female, age 72, midline 135.2
2816 Male, age 47, midline 122.0
2048 Male, age 55, midline 117.5
Cervical spinal cord, dorsal horn
nTPM: 265.5
2297 Male, age 75, both hemispheres 458.2
1877 Male, age 55, unknown 319.4
2069 Male, age 47, both hemispheres 305.1
2721 Male, age 90, both hemispheres 221.7
2173 Female, age 72, unknown 145.4
2296 Male, age 66, both hemispheres 143.4
Cervical spinal cord, ventral horn
nTPM: 194.4
2480 Male, age 75, both hemispheres 279.2
2295 Male, age 66, both hemispheres 247.2
2820 Female, age 79, both hemispheres 217.7
2068 Male, age 55, unknown 195.2
2809 Male, age 90, both hemispheres 178.5
2098 Female, age 72, unknown 48.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 152.5
Samples: 159

Max nTPM: 356.3
Min nTPM: 27.0
Std nTPM: 58.0
Median nTPM: 144.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 356.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 323.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 311.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 303.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 302.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 260.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 259.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 259.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 253.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 246.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 245.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 245.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 241.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 233.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 232.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 223.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 222.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 221.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 221.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 218.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 217.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 209.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 209.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 209.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 207.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 207.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 205.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 202.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 198.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 197.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 193.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 192.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 192.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 191.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 189.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 189.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 186.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 185.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 185.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 183.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 183.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 182.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 182.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 181.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 181.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 180.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 180.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 180.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 178.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 178.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 177.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 177.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 174.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 174.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 174.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 173.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 172.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 169.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 167.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 167.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 166.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 166.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 165.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 165.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 161.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 160.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 159.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 158.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 155.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 154.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 153.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 152.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 152.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 148.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 147.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 147.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 146.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 145.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 144.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 144.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 144.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 144.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 144.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 141.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 138.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 137.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 137.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 137.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 135.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 135.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 134.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 133.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 133.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 132.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 131.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 131.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 130.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 129.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 128.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 127.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 125.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 125.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 122.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 122.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 121.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 121.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 120.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 117.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 117.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 117.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 116.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 115.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 113.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 111.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 107.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 105.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 104.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 103.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 103.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 102.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 100.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 99.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 98.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 95.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 93.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 91.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 90.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 90.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 89.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 87.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 86.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 83.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 81.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 78.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 73.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 69.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 68.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 63.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 59.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 58.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 50.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 27.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1259.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1259.3
FF:10181-103D1 60 years, female 1665.9
FF:10159-103A6 76 years, female 852.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.8
Samples: 4

Max nTPM: 272.4
Min nTPM: 75.0
Sample A Female 272.4
Sample B Female 140.1
Sample C Male 75.0
Sample D Male 199.5
Ventral spinal cord
nTPM: 152.1
Samples: 4

Max nTPM: 165.7
Min nTPM: 136.7
Sample A Female 165.7
Sample B Female 148.9
Sample C Male 136.7
Sample D Male 157.0

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