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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
417.8
nTPM
FANTOM5:
306.5
Scaled Tags Per Million
Pig:
273.2
nTPM
Allen mouse:
9.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
417.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 181.5
1984
Male, age 76, both hemispheres
206.2
2188
Female, age 91, both hemispheres
198.8
2301
Female, age 85, both hemispheres
164.0
2090
Male, age 80, both hemispheres
157.0
Dorsal cochlear nucleus nTPM: 165.0
2187
Female, age 91, both hemispheres
190.5
2802
Male, age 74, right hemisphere
184.9
2058
Male, age 76, both hemispheres
170.2
2378
Male, age 80, both hemispheres
145.3
2370
Male, age 61, both hemispheres
133.8
Dorsal tegmental nucleus nTPM: 173.3
2326
Male, age 74, both hemispheres
200.0
2083
Male, age 80, both hemispheres
182.7
2358
Male, age 61, both hemispheres
168.7
1936
Male, age 76, left hemisphere
142.0
Dorsolateral tegmental area nTPM: 172.6
2654
Male, age 80, both hemispheres
195.2
2360
Male, age 74, both hemispheres
193.3
2751
Female, age 85, both hemispheres
185.6
2337
Male, age 61, both hemispheres
158.1
2141
Male, age 76, both hemispheres
130.6
Kolliker-Fuse nucleus nTPM: 234.6
2163
Male, age 80, both hemispheres
302.2
2793
Female, age 91, left hemisphere
217.7
2315
Male, age 76, right hemisphere
183.9
Lateral lemniscal nuclei nTPM: 263.5
2746
Female, age 85, left hemisphere
299.7
2036
Male, age 80, both hemispheres
296.1
2169
Male, age 76, both hemispheres
275.2
2453
Male, age 74, right hemisphere
245.3
2320
Female, age 91, left hemisphere
201.2
Lateral parabrachial nucleus nTPM: 226.7
2139
Female, age 85, right hemisphere
324.0
2013
Male, age 80, both hemispheres
217.9
2790
Male, age 61, both hemispheres
192.9
2792
Male, age 76, both hemispheres
172.0
Lateral vestibular nucleus nTPM: 190.0
2184
Male, age 76, both hemispheres
219.2
2311
Male, age 80, both hemispheres
160.9
Locus coeruleus nTPM: 417.8
2014
Male, age 55, unknown
673.6
2720
Male, age 74, both hemispheres
501.3
2123
Female, age 91, both hemispheres
482.7
2788
Male, age 74, unknown
359.3
2317
Female, age 72, unknown
358.2
1980
Male, age 76, both hemispheres
285.6
2162
Male, age 80, both hemispheres
263.8
Medial parabrachial nucleus nTPM: 196.1
2170
Female, age 91, both hemispheres
215.8
2854
Male, age 80, both hemispheres
214.7
2156
Male, age 61, both hemispheres
208.6
2463
Female, age 85, right hemisphere
193.2
2786
Male, age 76, both hemispheres
148.3
Medial periolivary nuclei nTPM: 255.7
2171
Female, age 85, both hemispheres
367.4
2063
Male, age 76, both hemispheres
290.5
2791
Male, age 74, right hemisphere
257.5
2081
Male, age 80, both hemispheres
186.0
2458
Female, age 91, both hemispheres
177.2
Motor facial nucleus nTPM: 231.4
2062
Male, age 76, both hemispheres
291.9
2365
Male, age 74, right hemisphere
276.6
2697
Female, age 85, both hemispheres
230.2
2327
Male, age 80, both hemispheres
201.3
2795
Female, age 91, both hemispheres
194.7
2126
Male, age 61, both hemispheres
193.7
Motor trigeminal nucleus nTPM: 192.8
2079
Male, age 80, both hemispheres
254.2
2560
Male, age 74, both hemispheres
235.7
2321
Female, age 91, both hemispheres
175.5
2335
Male, age 61, both hemispheres
152.2
2309
Male, age 76, both hemispheres
146.3
Nuclei of the trapezoid body nTPM: 268.7
2735
Female, age 85, both hemispheres
362.0
2159
Male, age 61, both hemispheres
330.2
1983
Male, age 76, both hemispheres
270.6
2166
Male, age 80, both hemispheres
204.3
2368
Female, age 91, both hemispheres
176.4
Nucleus raphe magnus nTPM: 284.8
2160
Male, age 61, both hemispheres
401.4
2172
Female, age 85, both hemispheres
371.6
2455
Male, age 74, both hemispheres
291.2
2051
Male, age 76, both hemispheres
231.4
2328
Male, age 80, both hemispheres
212.5
2459
Female, age 91, both hemispheres
200.7
Paramedian reticular nucleus nTPM: 218.6
2050
Female, age 85, both hemispheres
309.1
2057
Male, age 80, both hemispheres
206.3
2313
Male, age 61, both hemispheres
183.1
2052
Male, age 76, both hemispheres
175.7
Pedunculopontine tegmental nucleus nTPM: 195.6
2334
Male, age 80, both hemispheres
251.1
2338
Male, age 61, both hemispheres
182.1
1921
Female, age 85, both hemispheres
153.7
Pontine nuclei nTPM: 307.0
2787
Female, age 85, both hemispheres
446.7
2727
Male, age 61, right hemisphere
384.8
1863
Male, age 55, unknown
384.7
2109
Female, age 72, unknown
298.1
2454
Male, age 74, left hemisphere
286.9
1968
Male, age 76, left hemisphere
253.7
2319
Female, age 91, both hemispheres
208.1
2115
Male, age 80, left hemisphere
193.2
Pontine raphe nucleus nTPM: 220.5
2122
Female, age 85, midline
296.0
2853
Male, age 76, midline
145.0
Posteroventral cochlear nucleus nTPM: 183.4
2752
Female, age 85, both hemispheres
231.1
2070
Male, age 76, both hemispheres
207.6
2135
Female, age 91, both hemispheres
177.7
2341
Male, age 80, both hemispheres
161.2
2371
Male, age 61, both hemispheres
139.5
Principal sensory trigeminal nucleus nTPM: 248.5
2158
Male, age 61, both hemispheres
309.7
2008
Male, age 80, left hemisphere
286.9
2367
Female, age 91, left hemisphere
202.0
2324
Male, age 76, both hemispheres
195.5
Reticular pontine nucleus, caudal nTPM: 217.8
2559
Male, age 74, both hemispheres
237.4
2332
Male, age 80, right hemisphere
230.5
2092
Male, age 76, both hemispheres
224.4
2457
Female, age 91, both hemispheres
179.0
Reticular pontine nucleus, oral nTPM: 227.0
2361
Male, age 74, both hemispheres
332.4
2012
Female, age 85, both hemispheres
280.0
2366
Female, age 91, both hemispheres
193.7
1939
Male, age 80, both hemispheres
176.7
2167
Male, age 76, both hemispheres
152.1
Reticulotegmental nucleus nTPM: 198.6
2452
Male, age 74, both hemispheres
218.3
2325
Male, age 76, both hemispheres
201.1
2322
Female, age 91, both hemispheres
190.6
2333
Male, age 80, both hemispheres
184.3
Spinal trigeminal nucleus, oral nTPM: 227.7
2164
Male, age 80, both hemispheres
256.5
2737
Female, age 85, both hemispheres
254.3
1978
Male, age 76, both hemispheres
172.2
Subcoeruleus area nTPM: 210.4
1958
Male, age 80, both hemispheres
232.2
2323
Female, age 91, left hemisphere
230.0
2089
Male, age 76, left hemisphere
210.4
2451
Male, age 74, both hemispheres
194.2
2369
Female, age 85, left hemisphere
185.3
Superior olive nTPM: 253.3
1875
Female, age 85, both hemispheres
369.9
2364
Male, age 74, right hemisphere
271.8
2020
Male, age 76, both hemispheres
235.2
2561
Female, age 91, both hemispheres
195.7
2329
Male, age 80, right hemisphere
193.9
Ventral periolivary nuclei nTPM: 262.2
2130
Female, age 85, both hemispheres
329.8
2165
Male, age 80, both hemispheres
259.6
2023
Male, age 76, both hemispheres
246.5
2794
Female, age 91, left hemisphere
212.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 217.4
2449
Male, age 74, both hemispheres
269.1
2840
Female, age 85, both hemispheres
240.1
1959
Male, age 76, both hemispheres
229.6
2161
Male, age 80, both hemispheres
204.1
2359
Male, age 61, both hemispheres
186.3
2456
Female, age 91, both hemispheres
175.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
273.2
Pig sample
Sample description
nTPM
Pons nTPM: 273.2
Samples: 4
Max nTPM: 417.4
Min nTPM: 153.1
Sample A
Female
417.4
Sample B
Female
153.1
Sample C
Male
231.3
Sample D
Male
291.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
