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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:137.3 nTPM
HPA Brain:244.2 nTPM
GTEx:137.3 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:282.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 185.4
2565 Male, age 75, midline 248.6
1981 Female, age 72, midline 195.4
2816 Male, age 47, midline 169.1
2194 Female, age 79, both hemispheres 165.0
2048 Male, age 55, midline 149.0
Cervical spinal cord, dorsal horn
nTPM: 244.2
2296 Male, age 66, both hemispheres 276.2
2297 Male, age 75, both hemispheres 267.5
2069 Male, age 47, both hemispheres 261.2
1877 Male, age 55, unknown 237.9
2173 Female, age 72, unknown 236.2
2721 Male, age 90, both hemispheres 186.4
Cervical spinal cord, ventral horn
nTPM: 203.3
2480 Male, age 75, both hemispheres 273.2
2809 Male, age 90, both hemispheres 218.8
2098 Female, age 72, unknown 202.4
2295 Male, age 66, both hemispheres 183.3
2068 Male, age 55, unknown 175.9
2820 Female, age 79, both hemispheres 166.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 137.3
Samples: 159

Max nTPM: 312.1
Min nTPM: 81.2
Std nTPM: 36.9
Median nTPM: 130.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 312.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 303.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 269.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 239.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 233.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 224.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 216.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 216.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 195.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 193.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 187.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 184.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 183.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 182.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 177.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 176.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 175.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 175.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 171.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 169.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 169.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 167.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 165.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 163.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 162.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 161.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 161.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 161.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 159.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 158.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 157.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 157.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 156.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 155.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 154.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 154.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 154.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 153.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 153.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 152.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 152.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 151.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 150.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 150.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 149.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 147.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 146.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 146.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 145.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 145.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 144.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 144.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 144.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 144.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 144.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 141.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 141.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 140.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 140.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 137.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 137.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 137.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 136.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 135.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 135.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 134.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 134.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 133.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 133.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 133.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 132.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 130.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 130.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 130.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 130.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 129.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 129.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 128.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 127.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 127.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 127.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 127.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 127.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 126.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 126.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 125.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 124.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 123.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 123.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 122.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 122.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 122.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 121.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 121.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 121.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 119.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 119.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 119.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 119.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 119.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 118.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 118.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 118.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 118.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 117.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 117.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 116.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 116.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 114.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 114.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 113.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 113.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 112.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 111.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 108.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 107.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 106.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 105.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 104.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 102.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 101.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 100.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 100.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 98.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 97.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 97.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 95.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 95.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 93.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 91.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 90.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 89.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 87.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 85.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 82.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 81.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 118.5
FF:10159-103A6 76 years, female 124.7
FF:10181-103D1 60 years, female 112.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 212.4
Samples: 4

Max nTPM: 285.1
Min nTPM: 163.7
Sample A Female 285.1
Sample B Female 165.3
Sample C Male 163.7
Sample D Male 235.3
Ventral spinal cord
nTPM: 282.2
Samples: 4

Max nTPM: 325.5
Min nTPM: 227.2
Sample A Female 325.5
Sample B Female 286.2
Sample C Male 290.0
Sample D Male 227.2

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