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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
131.3
Sample id
Sample description
nTPM
Amygdala nTPM: 94.1
2814
Male, age 76, right hemisphere
166.9
2517
Female, age 94, left hemisphere
95.8
1987
Female, age 91, left hemisphere
82.1
2695
Female, age 67, right hemisphere
73.4
2514
Male, age 75, right hemisphere
52.6
Basal amygdala nTPM: 113.7
2685
Female, age 94, left hemisphere
171.5
2243
Female, age 91, right hemisphere
148.6
1955
Male, age 76, both hemispheres
138.0
2110
Male, age 80, left hemisphere
101.6
2609
Male, age 75, right hemisphere
61.1
2827
Female, age 67, right hemisphere
60.9
Central amygdala nTPM: 99.4
1905
Male, age 76, both hemispheres
175.7
2701
Female, age 91, right hemisphere
109.4
2239
Male, age 80, left hemisphere
86.1
2515
Male, age 75, right hemisphere
74.9
2826
Female, age 94, left hemisphere
51.1
Corticomedial amygdala nTPM: 131.3
2429
Female, age 94, left hemisphere
177.8
2240
Male, age 76, both hemispheres
149.5
2242
Female, age 91, right hemisphere
144.1
2535
Female, age 67, right hemisphere
134.8
2829
Male, age 80, left hemisphere
131.5
2428
Male, age 75, right hemisphere
50.3
Lateral amygdala nTPM: 75.5
1883
Male, age 76, both hemispheres
141.5
2255
Female, age 91, right hemisphere
86.4
2534
Female, age 94, left hemisphere
82.3
2256
Male, age 80, left hemisphere
68.6
2516
Male, age 75, right hemisphere
41.5
2830
Female, age 67, right hemisphere
32.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 43.3
Samples: 152
Max nTPM: 105.9
Min nTPM: 2.9
Std nTPM: 22.1
Median nTPM: 41.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
105.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
105.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
103.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
94.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
93.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
90.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
87.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
83.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
81.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
80.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
80.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
79.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
76.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
75.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
74.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
71.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
67.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
67.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
67.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
66.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
65.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
64.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
63.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
62.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
62.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
61.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
61.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
61.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
60.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
60.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
60.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
60.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
59.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
59.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
58.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
58.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
58.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
57.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
57.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
57.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
56.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
56.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
55.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
55.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
54.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
54.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
54.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
54.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
54.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
52.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
52.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
52.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
51.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
51.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
51.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
50.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
50.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
50.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
50.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
50.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
49.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
48.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
47.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
47.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
46.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
45.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
45.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
44.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
44.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
44.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
44.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
44.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
43.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
42.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
41.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
41.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
41.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
40.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
40.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
40.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
38.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
38.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
38.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
37.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
37.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
37.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
37.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
37.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
36.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
36.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
36.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
36.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
35.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
35.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
35.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
33.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
32.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
31.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
31.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
31.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
31.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
31.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
30.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
30.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
29.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
29.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
29.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
28.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
28.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
27.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
27.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
27.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
26.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
26.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
26.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
25.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
25.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
24.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
24.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
23.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
22.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
22.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
21.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
21.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
21.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
20.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
20.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
19.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
19.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
19.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
17.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
17.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
17.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
16.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
16.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
14.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
14.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
13.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
13.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
12.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
12.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
11.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
10.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
10.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
9.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
8.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
7.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
6.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
3.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
2.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
