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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
260.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 110.0
1984
Male, age 76, both hemispheres
162.4
2301
Female, age 85, both hemispheres
100.0
2188
Female, age 91, both hemispheres
99.8
2090
Male, age 80, both hemispheres
77.9
Dorsal cochlear nucleus nTPM: 86.6
2058
Male, age 76, both hemispheres
128.3
2370
Male, age 61, both hemispheres
89.6
2187
Female, age 91, both hemispheres
85.1
2378
Male, age 80, both hemispheres
76.9
2802
Male, age 74, right hemisphere
53.1
Dorsal tegmental nucleus nTPM: 94.6
2358
Male, age 61, both hemispheres
112.8
2083
Male, age 80, both hemispheres
104.7
1936
Male, age 76, left hemisphere
101.3
2326
Male, age 74, both hemispheres
59.5
Dorsolateral tegmental area nTPM: 89.2
2141
Male, age 76, both hemispheres
126.7
2654
Male, age 80, both hemispheres
100.9
2751
Female, age 85, both hemispheres
95.8
2360
Male, age 74, both hemispheres
72.2
2337
Male, age 61, both hemispheres
50.4
Kolliker-Fuse nucleus nTPM: 120.1
2163
Male, age 80, both hemispheres
147.0
2793
Female, age 91, left hemisphere
116.1
2315
Male, age 76, right hemisphere
97.2
Lateral lemniscal nuclei nTPM: 219.5
2169
Male, age 76, both hemispheres
294.6
2453
Male, age 74, right hemisphere
242.1
2036
Male, age 80, both hemispheres
236.5
2746
Female, age 85, left hemisphere
197.2
2320
Female, age 91, left hemisphere
127.0
Lateral parabrachial nucleus nTPM: 136.7
2139
Female, age 85, right hemisphere
239.6
2013
Male, age 80, both hemispheres
135.5
2790
Male, age 61, both hemispheres
102.5
2792
Male, age 76, both hemispheres
69.2
Lateral vestibular nucleus nTPM: 111.2
2184
Male, age 76, both hemispheres
139.3
2311
Male, age 80, both hemispheres
83.1
Locus coeruleus nTPM: 170.3
2123
Female, age 91, both hemispheres
267.4
2720
Male, age 74, both hemispheres
212.9
2014
Male, age 55, unknown
158.5
1980
Male, age 76, both hemispheres
156.8
2788
Male, age 74, unknown
140.1
2162
Male, age 80, both hemispheres
130.9
2317
Female, age 72, unknown
125.3
Medial parabrachial nucleus nTPM: 110.5
2854
Male, age 80, both hemispheres
158.8
2156
Male, age 61, both hemispheres
115.5
2463
Female, age 85, right hemisphere
97.2
2170
Female, age 91, both hemispheres
91.0
2786
Male, age 76, both hemispheres
89.9
Medial periolivary nuclei nTPM: 202.4
2171
Female, age 85, both hemispheres
343.5
2063
Male, age 76, both hemispheres
290.2
2791
Male, age 74, right hemisphere
154.5
2458
Female, age 91, both hemispheres
118.1
2081
Male, age 80, both hemispheres
105.5
Motor facial nucleus nTPM: 188.4
2062
Male, age 76, both hemispheres
309.9
2365
Male, age 74, right hemisphere
214.0
2697
Female, age 85, both hemispheres
191.7
2327
Male, age 80, both hemispheres
191.0
2795
Female, age 91, both hemispheres
129.4
2126
Male, age 61, both hemispheres
94.3
Motor trigeminal nucleus nTPM: 124.1
2079
Male, age 80, both hemispheres
189.1
2560
Male, age 74, both hemispheres
141.5
2321
Female, age 91, both hemispheres
99.8
2335
Male, age 61, both hemispheres
95.8
2309
Male, age 76, both hemispheres
94.2
Nuclei of the trapezoid body nTPM: 260.5
2159
Male, age 61, both hemispheres
439.0
2735
Female, age 85, both hemispheres
296.5
1983
Male, age 76, both hemispheres
259.9
2166
Male, age 80, both hemispheres
164.8
2368
Female, age 91, both hemispheres
142.5
Nucleus raphe magnus nTPM: 258.6
2160
Male, age 61, both hemispheres
358.1
2172
Female, age 85, both hemispheres
337.4
2455
Male, age 74, both hemispheres
302.5
2051
Male, age 76, both hemispheres
207.7
2328
Male, age 80, both hemispheres
189.0
2459
Female, age 91, both hemispheres
157.2
Paramedian reticular nucleus nTPM: 172.5
2050
Female, age 85, both hemispheres
309.3
2057
Male, age 80, both hemispheres
134.8
2313
Male, age 61, both hemispheres
125.9
2052
Male, age 76, both hemispheres
120.0
Pedunculopontine tegmental nucleus nTPM: 110.7
1921
Female, age 85, both hemispheres
121.5
2338
Male, age 61, both hemispheres
111.3
2334
Male, age 80, both hemispheres
99.2
Pontine nuclei nTPM: 252.9
1863
Male, age 55, unknown
389.9
2727
Male, age 61, right hemisphere
336.8
2787
Female, age 85, both hemispheres
333.8
2109
Female, age 72, unknown
296.0
1968
Male, age 76, left hemisphere
251.1
2454
Male, age 74, left hemisphere
190.1
2115
Male, age 80, left hemisphere
126.1
2319
Female, age 91, both hemispheres
99.1
Pontine raphe nucleus nTPM: 165.9
2122
Female, age 85, midline
233.8
2853
Male, age 76, midline
98.0
Posteroventral cochlear nucleus nTPM: 84.8
2752
Female, age 85, both hemispheres
147.3
2070
Male, age 76, both hemispheres
126.3
2371
Male, age 61, both hemispheres
72.5
2341
Male, age 80, both hemispheres
49.8
2135
Female, age 91, both hemispheres
28.0
Principal sensory trigeminal nucleus nTPM: 199.3
2158
Male, age 61, both hemispheres
317.9
2008
Male, age 80, left hemisphere
238.4
2324
Male, age 76, both hemispheres
126.2
2367
Female, age 91, left hemisphere
114.7
Reticular pontine nucleus, caudal nTPM: 147.3
2332
Male, age 80, right hemisphere
211.7
2092
Male, age 76, both hemispheres
193.2
2457
Female, age 91, both hemispheres
109.7
2559
Male, age 74, both hemispheres
74.6
Reticular pontine nucleus, oral nTPM: 152.8
2012
Female, age 85, both hemispheres
217.2
2361
Male, age 74, both hemispheres
204.1
1939
Male, age 80, both hemispheres
130.5
2167
Male, age 76, both hemispheres
116.7
2366
Female, age 91, both hemispheres
95.7
Reticulotegmental nucleus nTPM: 135.2
2325
Male, age 76, both hemispheres
194.1
2322
Female, age 91, both hemispheres
122.9
2333
Male, age 80, both hemispheres
119.3
2452
Male, age 74, both hemispheres
104.4
Spinal trigeminal nucleus, oral nTPM: 116.6
2737
Female, age 85, both hemispheres
150.7
2164
Male, age 80, both hemispheres
114.1
1978
Male, age 76, both hemispheres
84.8
Subcoeruleus area nTPM: 121.0
2089
Male, age 76, left hemisphere
172.8
1958
Male, age 80, both hemispheres
166.7
2323
Female, age 91, left hemisphere
122.9
2369
Female, age 85, left hemisphere
75.5
2451
Male, age 74, both hemispheres
67.0
Superior olive nTPM: 191.4
1875
Female, age 85, both hemispheres
295.8
2364
Male, age 74, right hemisphere
176.6
2020
Male, age 76, both hemispheres
173.6
2329
Male, age 80, right hemisphere
167.5
2561
Female, age 91, both hemispheres
143.3
Ventral periolivary nuclei nTPM: 213.0
2130
Female, age 85, both hemispheres
282.0
2165
Male, age 80, both hemispheres
226.7
2794
Female, age 91, left hemisphere
184.7
2023
Male, age 76, both hemispheres
158.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 163.4
2449
Male, age 74, both hemispheres
263.6
1959
Male, age 76, both hemispheres
198.9
2840
Female, age 85, both hemispheres
176.6
2161
Male, age 80, both hemispheres
152.4
2359
Male, age 61, both hemispheres
94.5
2456
Female, age 91, both hemispheres
94.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
