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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

22.107
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1311.8 nTPM
HPA Brain:90.3 nTPM
GTEx:1311.8 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:21.9 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA003372
Amygdala mean intensity 22.107
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 7.934
Basal medial amygdaloid nucleus 10.634
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 16.661
Cortical amygdala 17.734
Central amygdala 19.028
Medial amygdaloid nucleus 22.107

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.3
Sample id Sample description nTPM
Amygdala
nTPM: 90.3
2695 Female, age 67, right hemisphere 104.2
2514 Male, age 75, right hemisphere 101.0
1987 Female, age 91, left hemisphere 87.1
2517 Female, age 94, left hemisphere 81.4
2814 Male, age 76, right hemisphere 77.7
Basal amygdala
nTPM: 78.1
2827 Female, age 67, right hemisphere 107.8
2110 Male, age 80, left hemisphere 99.9
2609 Male, age 75, right hemisphere 82.5
2685 Female, age 94, left hemisphere 73.3
1955 Male, age 76, both hemispheres 54.7
2243 Female, age 91, right hemisphere 50.8
Central amygdala
nTPM: 79.8
2826 Female, age 94, left hemisphere 126.5
2515 Male, age 75, right hemisphere 97.3
1905 Male, age 76, both hemispheres 61.7
2701 Female, age 91, right hemisphere 60.3
2239 Male, age 80, left hemisphere 53.0
Corticomedial amygdala
nTPM: 64.8
2428 Male, age 75, right hemisphere 90.2
2829 Male, age 80, left hemisphere 80.2
2429 Female, age 94, left hemisphere 63.8
2240 Male, age 76, both hemispheres 57.2
2242 Female, age 91, right hemisphere 55.3
2535 Female, age 67, right hemisphere 41.9
Lateral amygdala
nTPM: 88.2
2830 Female, age 67, right hemisphere 150.0
2516 Male, age 75, right hemisphere 113.8
2534 Female, age 94, left hemisphere 88.5
1883 Male, age 76, both hemispheres 66.4
2256 Male, age 80, left hemisphere 57.4
2255 Female, age 91, right hemisphere 53.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1311.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1311.8
Samples: 152

Max nTPM: 4527.2
Min nTPM: 490.7
Std nTPM: 632.0
Median nTPM: 1173.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4527.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4509.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3703.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3267.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2946.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2668.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2505.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2475.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2384.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2244.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2178.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2109.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2105.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2051.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2029.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1926.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1860.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1826.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1814.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1775.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1769.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1746.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1745.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1690.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1686.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1686.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1642.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1627.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1616.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1605.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1598.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1564.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1560.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1549.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1535.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1526.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1523.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1489.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1484.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1476.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1451.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1450.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1432.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1411.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1408.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1408.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1405.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1400.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1395.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1388.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1354.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1351.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1342.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1341.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1340.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1320.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1307.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1300.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1300.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1300.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1291.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1287.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1285.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1265.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1261.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1244.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1241.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1240.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1237.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1216.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1212.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1204.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1199.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1196.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1184.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1175.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1171.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1169.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1154.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1150.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1142.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1127.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1123.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1118.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1115.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1112.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1110.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1107.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1102.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1098.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1096.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1089.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1088.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1085.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1078.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1052.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1051.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1048.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1047.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1044.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1043.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1040.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1017.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1016.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1008.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1000.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 988.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 974.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 972.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 965.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 955.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 953.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 946.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 934.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 927.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 918.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 916.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 910.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 896.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 883.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 873.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 864.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 864.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 863.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 857.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 844.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 843.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 825.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 821.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 820.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 803.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 795.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 785.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 776.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 772.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 768.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 759.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 749.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 741.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 739.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 733.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 678.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 640.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 630.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 628.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 616.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 606.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 587.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 576.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 546.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 535.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 490.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.7
FF:10151-102I7 76 years, female 16.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.9
Pig sample Sample description nTPM
Amygdala
nTPM: 21.9
Samples: 4

Max nTPM: 26.7
Min nTPM: 15.5
Sample A Female 26.7
Sample B Female 24.9
Sample C Male 20.4
Sample D Male 15.5

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