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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1139.0 nTPM
HPA Brain:155.2 nTPM
GTEx:1139.0 nTPM
FANTOM5:21.5 Scaled Tags Per Million
Pig:32.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 108.6
1981 Female, age 72, midline 160.4
2565 Male, age 75, midline 107.2
2048 Male, age 55, midline 102.1
2194 Female, age 79, both hemispheres 96.4
2816 Male, age 47, midline 77.1
Cervical spinal cord, dorsal horn
nTPM: 113.8
2173 Female, age 72, unknown 192.0
2069 Male, age 47, both hemispheres 151.8
2296 Male, age 66, both hemispheres 121.5
1877 Male, age 55, unknown 91.6
2721 Male, age 90, both hemispheres 64.8
2297 Male, age 75, both hemispheres 61.2
Cervical spinal cord, ventral horn
nTPM: 155.2
2809 Male, age 90, both hemispheres 189.2
2480 Male, age 75, both hemispheres 185.9
2098 Female, age 72, unknown 185.3
2295 Male, age 66, both hemispheres 146.5
2068 Male, age 55, unknown 136.8
2820 Female, age 79, both hemispheres 87.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1139.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1139.0
Samples: 159

Max nTPM: 2570.4
Min nTPM: 403.4
Std nTPM: 425.2
Median nTPM: 1035.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2570.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2396.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2377.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2182.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2131.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2032.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1939.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1935.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1930.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1904.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1852.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1841.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1828.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1800.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1786.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1751.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1721.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1709.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1682.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1669.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1642.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1635.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1630.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1617.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1612.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1605.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1602.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1575.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1563.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1546.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1535.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1525.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1495.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1490.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1477.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1474.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1461.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1430.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1426.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1407.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1406.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1392.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1365.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1363.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1335.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1334.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1330.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1318.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1284.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1281.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1273.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1269.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1255.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1242.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1242.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1226.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1216.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1184.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1174.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1172.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1151.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1141.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1126.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1126.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1124.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1121.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1120.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1119.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1114.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1114.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1109.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1109.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1098.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1097.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1086.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1083.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1056.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1044.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1035.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1035.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1034.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1033.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1029.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1017.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1015.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1013.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1007.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 998.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 983.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 981.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 937.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 933.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 930.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 919.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 915.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 915.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 915.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 913.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 907.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 904.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 903.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 899.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 891.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 890.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 879.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 875.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 875.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 874.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 874.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 873.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 868.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 862.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 859.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 856.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 855.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 850.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 843.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 839.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 826.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 824.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 816.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 811.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 806.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 803.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 799.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 797.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 796.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 793.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 792.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 788.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 780.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 779.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 778.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 768.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 757.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 741.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 729.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 720.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 720.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 717.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 709.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 706.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 705.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 697.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 666.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 654.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 647.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 644.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 642.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 624.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 619.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 616.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 604.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 593.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 588.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 498.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 441.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 415.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 403.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 21.5
FF:10181-103D1 60 years, female 27.4
FF:10159-103A6 76 years, female 15.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 32.5
Samples: 4

Max nTPM: 39.9
Min nTPM: 24.9
Sample A Female 26.3
Sample B Female 39.9
Sample C Male 38.8
Sample D Male 24.9
Ventral spinal cord
nTPM: 27.7
Samples: 4

Max nTPM: 30.2
Min nTPM: 24.1
Sample A Female 24.1
Sample B Female 26.9
Sample C Male 29.7
Sample D Male 30.2

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