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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:230.4 nTPM
HPA Brain:122.4 nTPM
GTEx:230.4 nTPM
FANTOM5:322.3 Scaled Tags Per Million
Pig:104.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.4
1981 Female, age 72, midline 180.0
2048 Male, age 55, midline 137.9
2816 Male, age 47, midline 105.7
2194 Female, age 79, both hemispheres 89.1
2565 Male, age 75, midline 79.2
Cervical spinal cord, dorsal horn
nTPM: 119.7
2173 Female, age 72, unknown 186.2
2296 Male, age 66, both hemispheres 161.5
2069 Male, age 47, both hemispheres 123.6
1877 Male, age 55, unknown 95.7
2721 Male, age 90, both hemispheres 91.8
2297 Male, age 75, both hemispheres 59.6
Cervical spinal cord, ventral horn
nTPM: 122.4
2098 Female, age 72, unknown 241.8
2809 Male, age 90, both hemispheres 129.4
2480 Male, age 75, both hemispheres 96.1
2068 Male, age 55, unknown 94.4
2295 Male, age 66, both hemispheres 94.2
2820 Female, age 79, both hemispheres 78.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 230.4
Samples: 159

Max nTPM: 399.2
Min nTPM: 96.4
Std nTPM: 47.6
Median nTPM: 233.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 399.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 344.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 328.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 322.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 315.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 313.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 311.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 308.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 308.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 304.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 295.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 292.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 292.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 289.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 289.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 289.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 283.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 282.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 279.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 278.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 276.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 275.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 275.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 275.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 274.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 273.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 272.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 271.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 269.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 269.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 269.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 269.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 268.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 267.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 266.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 266.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 264.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 263.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 263.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 261.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 261.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 261.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 261.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 259.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 258.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 257.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 255.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 253.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 252.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 251.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 249.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 249.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 249.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 249.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 248.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 248.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 246.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 246.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 246.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 245.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 244.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 244.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 244.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 244.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 244.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 243.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 242.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 239.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 239.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 239.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 238.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 238.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 237.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 237.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 236.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 235.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 233.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 233.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 233.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 232.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 232.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 231.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 231.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 231.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 229.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 228.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 226.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 226.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 224.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 224.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 223.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 222.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 222.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 222.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 222.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 220.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 217.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 214.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 212.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 212.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 211.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 211.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 210.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 210.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 210.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 210.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 209.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 209.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 208.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 208.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 207.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 206.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 205.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 204.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 203.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 203.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 199.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 197.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 197.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 197.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 197.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 195.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 195.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 194.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 194.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 194.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 192.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 190.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 187.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 187.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 186.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 185.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 184.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 181.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 180.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 178.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 177.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 176.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 175.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 174.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 174.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 173.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 164.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 160.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 157.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 154.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 150.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 147.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 126.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 112.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

322.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 322.3
FF:10159-103A6 76 years, female 326.4
FF:10181-103D1 60 years, female 318.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 78.0
Samples: 4

Max nTPM: 96.6
Min nTPM: 56.9
Sample A Female 56.9
Sample B Female 86.1
Sample C Male 96.6
Sample D Male 72.3
Ventral spinal cord
nTPM: 104.3
Samples: 4

Max nTPM: 136.9
Min nTPM: 85.5
Sample A Female 85.5
Sample B Female 102.2
Sample C Male 92.4
Sample D Male 136.9

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