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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1089.6 nTPM
HPA Brain:391.0 nTPM
GTEx:1089.6 nTPM
FANTOM5:35.3 Scaled Tags Per Million
Pig:511.8 nTPM
Mouse:1292.4 nTPM
Allen mouse:12.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.0
Sample id Sample description nTPM
Amygdala
nTPM: 390.3
2695 Female, age 67, right hemisphere 487.6
2514 Male, age 75, right hemisphere 422.3
2517 Female, age 94, left hemisphere 366.1
1987 Female, age 91, left hemisphere 349.3
2814 Male, age 76, right hemisphere 326.2
Basal amygdala
nTPM: 325.2
2827 Female, age 67, right hemisphere 433.0
2609 Male, age 75, right hemisphere 364.2
2110 Male, age 80, left hemisphere 308.2
2685 Female, age 94, left hemisphere 306.1
1955 Male, age 76, both hemispheres 281.3
2243 Female, age 91, right hemisphere 258.5
Central amygdala
nTPM: 360.0
2826 Female, age 94, left hemisphere 536.2
2515 Male, age 75, right hemisphere 411.4
2239 Male, age 80, left hemisphere 287.3
1905 Male, age 76, both hemispheres 285.0
2701 Female, age 91, right hemisphere 279.9
Corticomedial amygdala
nTPM: 326.6
2428 Male, age 75, right hemisphere 400.1
2535 Female, age 67, right hemisphere 340.8
2429 Female, age 94, left hemisphere 333.4
2829 Male, age 80, left hemisphere 331.1
2242 Female, age 91, right hemisphere 299.4
2240 Male, age 76, both hemispheres 254.6
Lateral amygdala
nTPM: 391.0
2830 Female, age 67, right hemisphere 546.9
2516 Male, age 75, right hemisphere 470.6
2534 Female, age 94, left hemisphere 423.2
2256 Male, age 80, left hemisphere 344.9
1883 Male, age 76, both hemispheres 286.5
2255 Female, age 91, right hemisphere 274.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1089.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1089.6
Samples: 152

Max nTPM: 3631.0
Min nTPM: 543.6
Std nTPM: 471.6
Median nTPM: 954.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3631.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2885.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2854.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2436.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2375.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2283.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1996.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1954.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1944.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1916.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1750.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1742.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1705.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1697.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1694.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1690.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1605.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1605.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1567.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1553.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1534.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1500.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1484.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1446.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1411.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1373.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1367.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1327.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1324.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1323.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1289.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1279.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1271.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1268.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1260.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1258.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1245.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1241.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1236.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1235.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1223.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1215.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1196.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1194.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1187.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1184.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1171.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1167.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1162.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1157.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1146.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1139.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1137.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1131.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1130.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1114.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1097.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1095.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1078.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1074.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1071.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1063.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1056.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1037.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1025.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1014.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1009.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 997.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 993.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 991.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 991.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 976.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 973.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 967.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 962.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 957.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 952.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 951.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 948.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 928.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 919.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 917.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 910.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 908.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 907.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 904.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 903.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 895.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 891.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 887.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 877.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 865.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 860.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 854.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 850.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 846.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 836.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 829.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 828.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 828.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 827.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 814.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 813.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 809.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 808.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 803.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 802.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 795.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 794.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 788.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 786.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 779.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 778.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 776.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 774.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 769.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 769.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 765.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 765.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 757.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 752.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 747.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 743.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 737.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 732.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 729.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 729.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 723.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 722.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 719.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 714.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 711.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 711.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 710.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 704.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 700.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 694.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 691.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 681.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 677.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 677.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 671.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 663.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 654.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 648.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 644.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 640.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 634.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 625.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 570.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 553.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 543.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 35.3
FF:10151-102I7 76 years, female 35.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.8
Pig sample Sample description nTPM
Amygdala
nTPM: 511.8
Samples: 4

Max nTPM: 650.7
Min nTPM: 336.0
Sample A Female 650.7
Sample B Female 547.9
Sample C Male 512.6
Sample D Male 336.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1292.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 1292.4
Samples: 4

Max nTPM: 1404.3
Min nTPM: 1190.0
Sample A Male 1190.0
Sample B Male 1301.3
Sample C Female 1404.3
Sample D Female 1274.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.6
69012777 Antisense, RP_050309_01_E01, Mouse strain C57BL/6J (56 days, male) 12.6

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