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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:841.9 nTPM
HPA Brain:504.1 nTPM
GTEx:841.9 nTPM
FANTOM5:29.1 Scaled Tags Per Million
Pig:819.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 386.2
2565 Male, age 75, midline 491.4
1981 Female, age 72, midline 440.3
2048 Male, age 55, midline 373.7
2194 Female, age 79, both hemispheres 325.7
2816 Male, age 47, midline 300.1
Cervical spinal cord, dorsal horn
nTPM: 399.4
2069 Male, age 47, both hemispheres 501.3
2173 Female, age 72, unknown 498.6
2296 Male, age 66, both hemispheres 469.0
1877 Male, age 55, unknown 382.3
2297 Male, age 75, both hemispheres 282.0
2721 Male, age 90, both hemispheres 263.0
Cervical spinal cord, ventral horn
nTPM: 504.1
2480 Male, age 75, both hemispheres 680.8
2809 Male, age 90, both hemispheres 652.7
2098 Female, age 72, unknown 606.7
2295 Male, age 66, both hemispheres 428.0
2068 Male, age 55, unknown 395.8
2820 Female, age 79, both hemispheres 260.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

841.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 841.9
Samples: 159

Max nTPM: 1554.2
Min nTPM: 331.4
Std nTPM: 245.3
Median nTPM: 795.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1554.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1532.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1497.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1447.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1428.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1420.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1337.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1334.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1320.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1318.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1272.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1259.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1220.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1215.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1202.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1191.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1158.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1135.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1128.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1128.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1128.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1119.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1104.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1092.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1074.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1072.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1067.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1066.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1059.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1046.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1042.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1036.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1035.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1028.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1027.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1009.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1000.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 989.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 983.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 979.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 979.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 973.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 970.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 959.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 958.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 955.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 952.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 952.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 947.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 930.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 929.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 929.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 925.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 901.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 899.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 898.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 897.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 894.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 889.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 888.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 886.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 881.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 878.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 861.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 860.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 858.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 855.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 850.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 846.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 842.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 841.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 831.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 830.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 828.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 827.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 822.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 821.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 820.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 812.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 795.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 794.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 793.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 792.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 790.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 788.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 788.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 787.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 786.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 784.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 781.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 776.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 769.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 768.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 767.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 765.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 762.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 759.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 756.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 755.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 749.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 748.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 741.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 740.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 733.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 731.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 728.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 724.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 721.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 719.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 703.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 702.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 698.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 698.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 677.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 677.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 666.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 660.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 651.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 644.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 643.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 642.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 642.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 633.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 615.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 613.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 612.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 611.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 610.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 607.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 606.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 605.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 603.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 599.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 596.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 594.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 588.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 581.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 580.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 579.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 576.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 574.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 571.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 571.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 571.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 569.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 569.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 562.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 558.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 549.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 547.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 530.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 496.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 489.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 487.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 473.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 468.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 387.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 363.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 331.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29.1
FF:10181-103D1 60 years, female 37.5
FF:10159-103A6 76 years, female 20.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

819.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 819.5
Samples: 4

Max nTPM: 1265.7
Min nTPM: 551.2
Sample A Female 551.2
Sample B Female 820.7
Sample C Male 1265.7
Sample D Male 640.5
Ventral spinal cord
nTPM: 704.7
Samples: 4

Max nTPM: 898.9
Min nTPM: 525.6
Sample A Female 525.6
Sample B Female 726.5
Sample C Male 898.9
Sample D Male 667.9

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