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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:132.4 nTPM
HPA Brain:50.3 nTPM
GTEx:132.4 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:302.3 nTPM
Allen mouse:3.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.3
Sample id Sample description nTPM
Amygdala
nTPM: 47.4
1987 Female, age 91, left hemisphere 71.0
2695 Female, age 67, right hemisphere 42.4
2517 Female, age 94, left hemisphere 41.8
2514 Male, age 75, right hemisphere 41.1
2814 Male, age 76, right hemisphere 40.5
Basal amygdala
nTPM: 36.3
1955 Male, age 76, both hemispheres 56.9
2243 Female, age 91, right hemisphere 40.1
2110 Male, age 80, left hemisphere 38.1
2685 Female, age 94, left hemisphere 33.4
2609 Male, age 75, right hemisphere 25.1
2827 Female, age 67, right hemisphere 24.3
Central amygdala
nTPM: 50.3
2515 Male, age 75, right hemisphere 78.5
2701 Female, age 91, right hemisphere 50.1
2239 Male, age 80, left hemisphere 46.6
1905 Male, age 76, both hemispheres 45.1
2826 Female, age 94, left hemisphere 31.1
Corticomedial amygdala
nTPM: 41.8
2240 Male, age 76, both hemispheres 52.6
2242 Female, age 91, right hemisphere 49.8
2429 Female, age 94, left hemisphere 45.1
2829 Male, age 80, left hemisphere 37.6
2535 Female, age 67, right hemisphere 34.1
2428 Male, age 75, right hemisphere 31.4
Lateral amygdala
nTPM: 33.9
2256 Male, age 80, left hemisphere 59.2
1883 Male, age 76, both hemispheres 39.0
2255 Female, age 91, right hemisphere 33.0
2534 Female, age 94, left hemisphere 30.4
2516 Male, age 75, right hemisphere 22.3
2830 Female, age 67, right hemisphere 19.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.4
Samples: 152

Max nTPM: 668.0
Min nTPM: 30.7
Std nTPM: 106.1
Median nTPM: 97.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 668.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 624.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 623.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 563.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 483.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 399.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 378.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 341.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 324.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 322.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 276.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 261.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 242.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 239.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 239.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 230.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 226.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 219.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 214.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 206.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 205.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 187.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 187.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 169.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 168.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 167.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 164.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 159.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 154.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 151.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 143.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 131.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 130.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 127.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 125.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 124.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 124.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 123.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 123.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 118.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 117.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 117.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 114.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 113.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 112.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 111.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 110.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 106.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 105.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 101.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 101.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 101.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 101.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 100.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 99.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 98.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 96.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 96.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 95.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 95.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 94.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 94.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 91.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 91.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 90.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 88.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 88.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 88.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 87.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 85.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 85.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 85.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 85.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 84.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 83.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 82.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 81.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 81.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 80.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 78.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 77.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 77.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 77.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 77.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 77.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 76.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 75.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 75.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 75.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 73.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 73.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 71.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 70.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 70.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 69.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 69.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 66.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 66.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 64.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 63.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 60.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 60.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 56.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 54.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 47.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 30.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.6
FF:10151-102I7 76 years, female 52.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.3
Pig sample Sample description nTPM
Amygdala
nTPM: 7.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.4
Sample A Female 9.1
Sample B Female 6.9
Sample C Male 6.6
Sample D Male 6.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

302.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 302.3
Samples: 4

Max nTPM: 330.1
Min nTPM: 278.9
Sample A Male 278.9
Sample B Male 296.6
Sample C Female 330.1
Sample D Female 303.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
70634396 Antisense, RP_050725_01_F09, Mouse strain C57BL/6J (56 days, male) 6.8
631728 Antisense, RP_040907_01_C08, Mouse strain C57BL/6J (56 days, male) 0.5

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