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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:165.6 nTPM
HPA Brain:112.1 nTPM
GTEx:165.6 nTPM
FANTOM5:180.7 Scaled Tags Per Million
Pig:27.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.1
2048 Male, age 55, midline 160.3
1981 Female, age 72, midline 135.8
2816 Male, age 47, midline 102.4
2194 Female, age 79, both hemispheres 82.6
2565 Male, age 75, midline 79.4
Cervical spinal cord, dorsal horn
nTPM: 96.2
2296 Male, age 66, both hemispheres 138.0
2069 Male, age 47, both hemispheres 117.8
2721 Male, age 90, both hemispheres 102.6
2173 Female, age 72, unknown 92.1
1877 Male, age 55, unknown 83.6
2297 Male, age 75, both hemispheres 43.0
Cervical spinal cord, ventral horn
nTPM: 84.3
2098 Female, age 72, unknown 224.7
2809 Male, age 90, both hemispheres 87.8
2068 Male, age 55, unknown 52.0
2480 Male, age 75, both hemispheres 49.6
2820 Female, age 79, both hemispheres 46.3
2295 Male, age 66, both hemispheres 45.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 165.6
Samples: 159

Max nTPM: 808.6
Min nTPM: 46.9
Std nTPM: 109.1
Median nTPM: 133.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 808.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 636.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 561.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 549.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 495.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 463.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 445.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 414.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 376.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 362.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 337.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 300.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 281.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 280.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 271.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 270.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 260.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 250.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 238.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 238.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 236.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 234.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 229.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 228.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 223.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 219.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 218.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 212.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 212.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 210.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 206.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 206.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 205.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 201.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 198.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 197.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 196.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 185.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 182.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 179.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 175.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 175.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 175.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 174.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 173.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 172.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 171.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 169.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 169.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 169.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 167.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 165.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 163.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 162.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 162.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 162.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 160.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 159.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 158.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 157.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 157.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 157.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 153.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 151.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 149.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 148.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 147.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 147.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 145.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 144.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 143.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 142.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 141.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 140.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 136.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 135.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 133.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 133.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 132.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 132.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 130.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 129.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 129.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 128.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 127.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 126.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 125.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 124.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 123.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 122.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 122.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 122.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 120.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 119.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 116.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 113.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 112.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 112.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 109.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 106.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 105.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 105.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 105.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 104.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 104.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 104.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 104.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 103.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 103.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 102.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 101.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 101.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 100.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 99.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 98.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 96.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 94.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 94.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 92.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 92.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 91.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 88.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 86.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 85.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 84.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 77.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 77.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 72.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 72.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 71.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 70.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 70.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 68.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 66.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 63.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 62.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 46.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 180.7
FF:10181-103D1 60 years, female 252.6
FF:10159-103A6 76 years, female 108.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.1
Samples: 4

Max nTPM: 29.5
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 25.5
Sample C Male 29.5
Sample D Male 22.1
Ventral spinal cord
nTPM: 27.8
Samples: 4

Max nTPM: 34.1
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 27.6
Sample C Male 28.8
Sample D Male 34.1

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