We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FABP5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • FABP5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:125.2 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:10.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051895Antibody CAB017831Antibody CAB040577
Glial cells Not detectedNot detectedLow
Neuronal cells Not detectedLowMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 125.2
Samples: 246

Max nTPM: 694.8
Min nTPM: 38.3
Std nTPM: 77.1
Median nTPM: 102.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 694.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 543.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 444.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 378.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 361.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 326.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 318.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 315.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 298.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 295.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 293.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 270.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 265.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 265.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 264.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 256.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 243.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 240.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 239.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 239.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 234.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 228.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 215.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 214.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 210.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 208.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 206.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 204.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 197.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 197.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 195.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 188.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 182.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 178.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 178.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 173.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 172.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 171.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 170.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 169.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 167.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 159.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 158.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 154.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 153.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 153.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 152.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 152.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 150.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 149.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 148.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 144.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 144.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 143.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 143.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 141.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 141.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 139.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 138.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 137.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 137.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 137.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 133.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 133.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 132.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 132.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 131.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 129.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 129.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 128.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 127.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 126.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 125.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 121.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 121.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 120.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 120.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 120.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 118.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 118.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 117.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 117.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 115.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 115.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 115.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 115.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 114.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 113.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 113.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 113.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 112.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 112.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 112.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 112.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 111.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 111.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 109.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 109.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 108.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 108.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 107.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 106.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 106.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 105.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 105.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 104.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 103.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 103.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 103.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 103.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 103.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 103.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 103.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 102.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 102.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 101.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 101.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 100.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 100.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 98.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 98.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 96.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 96.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 96.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 95.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 95.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 95.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 95.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 95.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 94.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 94.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 94.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 94.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 94.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 94.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 94.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 94.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 94.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 93.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 93.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 93.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 93.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 93.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 93.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 93.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 93.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 93.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 92.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 92.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 92.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 91.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 90.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 90.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 89.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 88.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 88.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 88.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 88.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 87.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 86.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 86.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 86.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 86.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 86.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 85.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 85.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 85.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 84.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 84.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 84.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 84.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 83.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 83.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 83.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 82.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 81.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 81.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 81.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 80.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 80.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 80.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 80.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 80.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 79.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 78.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 77.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 77.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 76.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 75.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 74.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 74.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 73.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 73.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 72.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 72.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 71.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 71.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 70.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 69.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 69.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 69.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 68.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 68.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 64.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 64.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 63.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 63.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 62.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 59.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 57.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 57.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 56.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 54.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 47.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 47.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 42.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 38.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 106.6
FF:10164-103B2 76 years, female 106.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.3
Sample A Female 10.7
Sample B Female 8.3
Sample C Male 13.3
Sample D Male 10.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org