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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:252.8 nTPM
HPA:110.5 nTPM
GTEx:252.8 nTPM
FANTOM5:615.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018156Antibody HPA048998Antibody CAB000457
Glandular cells HighHighNot detected







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.5
overview
Male, age 65
Small intestine sample 232
nTPM: 79
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 106.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 152.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 104.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 252.8
Samples: 187

Max nTPM: 660.3
Min nTPM: 55.3
Std nTPM: 88.7
Median nTPM: 247.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 660.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 570.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 465.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 456.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 454.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 438.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 430.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 425.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 405.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 397.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 393.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 388.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 385.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 371.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 369.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 366.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 365.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 362.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 359.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 358.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 357.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 355.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 355.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 355.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 351.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 349.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 348.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 347.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 346.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 342.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 342.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 341.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 337.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 333.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 329.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 325.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 318.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 317.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 316.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 316.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 312.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 310.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 308.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 308.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 301.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 301.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 299.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 296.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 296.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 294.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 289.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 285.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 285.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 283.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 281.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 281.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 280.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 279.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 277.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 277.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 277.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 276.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 276.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 275.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 273.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 272.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 271.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 271.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 271.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 271.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 270.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 269.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 267.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 266.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 263.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 263.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 262.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 261.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 261.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 261.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 260.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 259.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 259.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 258.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 258.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 258.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 258.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 258.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 257.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 255.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 251.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 249.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 247.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 247.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 246.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 244.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 242.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 240.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 237.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 235.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 235.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 234.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 233.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 232.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 231.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 230.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 229.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 229.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 224.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 224.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 224.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 223.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 223.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 223.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 222.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 220.6
GTEX-1192X-2526-SM-59868 50-59 years, male 220.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 219.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 219.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 218.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 217.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 216.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 216.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 214.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 212.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 212.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 212.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 210.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 210.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 209.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 208.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 207.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 206.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 204.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 203.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 203.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 200.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 199.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 198.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 198.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 197.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 195.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 195.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 194.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 192.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 191.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 187.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 186.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 186.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 186.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 185.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 185.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 182.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 175.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 173.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 172.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 167.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 166.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 166.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 165.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 163.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 161.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 161.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 160.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 153.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 152.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 152.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 151.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 151.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 147.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 143.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 143.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 139.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 137.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 137.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 129.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 127.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 121.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 116.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 114.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 113.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 107.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 89.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 85.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 72.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 72.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 55.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

615.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 615.7
FF:10024-101D6 15,40,85 years, mixed 615.7

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