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  • ALDH1A1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

90.615
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:132.2 nTPM
FANTOM5:81.6 Scaled Tags Per Million
Pig:26.1 nTPM
Allen mouse:0.5 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA002123
Medulla oblongata mean intensity 90.615
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 54.277
Raphe magnus nucleus 50.408
Cochlear nucleus 52.800
Lateral paragigantocellular nucleus 57.789
Raphe pallidus nucleus 48.266
Facial nucleus 49.449
Hypoglossal nucleus 70.992
Ambiguus nucleus 59.741
External cuneate nucleus 48.396
Inferior olivary nucleus 45.743
Raphe obscures nucleus 40.885
Dorsal motor nucleus of vagus 77.452

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.2
Sample id Sample description nTPM
Area postrema
nTPM: 104.9
2306 Male, age 80, both hemispheres 122.0
2799 Male, age 61, both hemispheres 105.1
2054 Male, age 76, both hemispheres 87.6
Dorsal medullary reticular nucleus
nTPM: 110.4
2040 Female, age 85, both hemispheres 122.5
2373 Male, age 61, both hemispheres 119.5
2088 Male, age 76, both hemispheres 89.3
Dorsal motor vagal complex
nTPM: 111.3
2797 Male, age 61, both hemispheres 171.2
2844 Male, age 55, unknown 118.9
2643 Male, age 74, both hemispheres 115.4
2000 Male, age 74, unknown 110.6
2807 Female, age 85, both hemispheres 106.7
2813 Female, age 72, unknown 95.0
2185 Male, age 76, both hemispheres 92.5
2133 Female, age 91, both hemispheres 80.2
Gigantocellular reticular nuclei, medullary
nTPM: 78.1
1876 Female, age 85, both hemispheres 109.1
2314 Male, age 61, both hemispheres 102.2
2022 Male, age 76, right hemisphere 79.7
2387 Female, age 91, both hemispheres 73.9
2310 Male, age 80, both hemispheres 54.4
2462 Male, age 74, both hemispheres 49.1
Gigantocellular reticular nuclei, pars
nTPM: 74.0
2084 Female, age 85, both hemispheres 119.4
2706 Male, age 80, both hemispheres 72.5
2336 Male, age 61, both hemispheres 71.0
2330 Male, age 80, both hemispheres 65.0
2168 Male, age 76, both hemispheres 41.9
Inferior olive
nTPM: 132.2
2085 Female, age 85, both hemispheres 193.0
2379 Male, age 80, both hemispheres 147.5
2563 Male, age 74, both hemispheres 139.0
2178 Male, age 61, both hemispheres 104.0
2628 Female, age 91, both hemispheres 77.6
Lateral medullary reticular nucleus
nTPM: 108.9
2190 Female, age 85, both hemispheres 135.0
2804 Female, age 91, both hemispheres 125.0
2374 Male, age 61, both hemispheres 115.8
2852 Male, age 80, both hemispheres 102.7
2044 Male, age 76, both hemispheres 97.4
2305 Male, age 74, both hemispheres 77.2
Medial olivary nucleus
nTPM: 113.0
1943 Male, age 61, both hemispheres 177.5
1962 Male, age 76, both hemispheres 96.0
2138 Female, age 91, both hemispheres 91.5
2851 Male, age 80, both hemispheres 86.9
Medial vestibular nucleus
nTPM: 76.7
2803 Female, age 91, both hemispheres 99.1
2093 Male, age 80, both hemispheres 98.4
2134 Male, age 76, both hemispheres 68.9
2801 Male, age 74, both hemispheres 67.5
2624 Male, age 61, both hemispheres 63.6
2743 Female, age 85, both hemispheres 62.7
Motor hypoglossal nucleus
nTPM: 81.0
2125 Female, age 91, both hemispheres 102.6
2132 Female, age 85, both hemispheres 87.8
2461 Male, age 61, both hemispheres 79.7
2182 Male, age 80, both hemispheres 75.0
2277 Male, age 76, both hemispheres 59.8
Nucleus ambiguus
nTPM: 104.8
2071 Male, age 76, both hemispheres 138.5
2096 Female, age 85, both hemispheres 71.0
Nucleus cuneatus
nTPM: 99.6
2808 Female, age 85, both hemispheres 119.8
2805 Female, age 91, both hemispheres 119.6
2380 Male, age 80, both hemispheres 111.5
2564 Male, age 74, both hemispheres 108.1
2562 Male, age 61, both hemispheres 106.7
2100 Male, age 76, both hemispheres 94.9
2381 Male, age 80, both hemispheres 91.9
2376 Male, age 61, both hemispheres 77.6
2131 Male, age 76, both hemispheres 66.6
Nucleus gracilis
nTPM: 109.6
2299 Female, age 85, both hemispheres 121.1
2627 Male, age 74, both hemispheres 110.5
2382 Male, age 80, both hemispheres 97.4
Nucleus raphe obscurus
nTPM: 124.6
2845 Female, age 85, midline 142.8
2142 Male, age 76, midline 130.9
2800 Male, age 61, midline 100.1
Nucleus raphe pallidus
nTPM: 88.1
2145 Male, age 76, midline 104.3
2183 Male, age 80, midline 83.7
1924 Male, age 61, midline 76.4
Nucleus tractus solitarii
nTPM: 69.3
2191 Female, age 85, both hemispheres 82.8
2144 Female, age 91, right hemisphere 78.7
2656 Male, age 76, both hemispheres 61.9
2307 Male, age 80, both hemispheres 53.8
Parvicellular reticular nuclei
nTPM: 75.5
2119 Male, age 80, both hemispheres 106.3
2095 Male, age 76, both hemispheres 81.3
2558 Male, age 74, both hemispheres 38.7
Parvicellular reticular nuclei, medullary
nTPM: 84.2
2091 Female, age 85, both hemispheres 93.5
2181 Male, age 80, left hemisphere 87.7
2189 Female, age 91, both hemispheres 71.3
Peritrigeminal nucleus
nTPM: 118.8
2067 Female, age 85, both hemispheres 153.9
2136 Male, age 76, both hemispheres 106.6
2179 Male, age 61, both hemispheres 95.9
Prepositus hypoglossal nucleus
nTPM: 91.4
2086 Male, age 80, both hemispheres 91.9
2855 Female, age 85, right hemisphere 90.9
Spinal trigeminal nucleus, caudal
nTPM: 85.5
2642 Male, age 74, both hemispheres 98.5
2308 Male, age 80, both hemispheres 92.0
2390 Female, age 91, both hemispheres 84.3
2447 Male, age 76, both hemispheres 76.7
2312 Male, age 61, both hemispheres 76.1
Spinal trigeminal nucleus, interpolar
nTPM: 86.3
2033 Male, age 80, both hemispheres 99.1
2386 Female, age 85, both hemispheres 96.3
2625 Male, age 61, both hemispheres 92.3
2066 Male, age 76, right hemisphere 81.7
2389 Female, age 91, both hemispheres 62.1
Spinal vestibular nucleus
nTPM: 104.7
2806 Female, age 85, both hemispheres 125.6
2384 Male, age 74, both hemispheres 115.3
2748 Male, age 76, both hemispheres 99.9
2186 Female, age 91, both hemispheres 97.5
2796 Male, age 61, both hemispheres 96.3
2780 Male, age 80, both hemispheres 93.9
Superior vestibular nucleus
nTPM: 67.9
2015 Male, age 80, both hemispheres 85.1
2061 Male, age 76, both hemispheres 64.2
2383 Male, age 74, both hemispheres 54.6
Ventral medullary reticular nucleus
nTPM: 108.8
2372 Male, age 61, both hemispheres 130.0
2060 Male, age 76, both hemispheres 87.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 99.1
2741 Female, age 85, both hemispheres 112.6
2118 Male, age 80, both hemispheres 105.6
1986 Male, age 76, both hemispheres 96.8
2180 Male, age 61, both hemispheres 93.0
2302 Female, age 91, both hemispheres 87.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 81.6
FF:10038-101F2 18-64 years, mixed 96.3
FF:10155-103A2 76 years, female 92.5
FF:10174-103C3 60 years, female 56.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 26.2
Samples: 4

Max nTPM: 53.1
Min nTPM: 12.9
Sample A Female 15.2
Sample B Female 23.5
Sample C Male 12.9
Sample D Male 53.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.5
72103809 Antisense, RP_051017_03_D07, Mouse strain C57BL/6J (56 days, male) 0.6
69013627 Antisense, RP_050309_02_F10, Mouse strain C57BL/6J (56 days, male) 0.4

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