MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:289.5 nTPM
HPA Brain:738.6 nTPM
GTEx:289.5 nTPM
FANTOM5:91.1 Scaled Tags Per Million
Pig:494.1 nTPM
Mouse:430.7 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 738.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.3
2219 Male, age 76, both hemispheres 660.7
2828 Female, age 72, unknown 131.7
2586 Male, age 75, left hemisphere 115.5
2666 Male, age 74, left hemisphere 101.7
1833 Male, age 53, unknown 77.7
2411 Female, age 72, unknown 74.3
1827 Male, age 72, unknown 66.2
1830 Male, age 51, unknown 60.2
1870 Female, age 42, unknown 56.1
2019 Male, age 18, unknown 49.2
Dorsal raphe nucleus
nTPM: 87.0
2016 Female, age 72, unknown 113.1
1828 Male, age 53, unknown 91.3
2047 Male, age 72, unknown 78.1
2750 Male, age 76, both hemispheres 76.8
2298 Female, age 72, unknown 75.6
Inferior colliculus
nTPM: 88.5
1890 Male, age 53, unknown 104.8
2097 Female, age 72, unknown 90.5
1848 Female, age 42, unknown 84.2
2849 Male, age 72, unknown 74.3
Median raphe nucleus
nTPM: 56.1
2220 Male, age 76, midline 56.1
Periaquaductal grey, anterior
nTPM: 62.7
2502 Female, age 75, unknown 88.3
1947 Male, age 18, unknown 53.8
1795 Male, age 51, unknown 46.1
Periaquaductal grey, dorsal
nTPM: 81.1
1840 Male, age 53, unknown 108.7
2464 Female, age 72, unknown 84.2
2850 Male, age 76, both hemispheres 72.9
1831 Male, age 72, unknown 58.6
Periaquaductal grey, lateral
nTPM: 54.3
2053 Male, age 18, unknown 61.3
2140 Male, age 76, both hemispheres 58.6
2272 Male, age 74, both hemispheres 43.0
Pretectal area
nTPM: 65.3
1815 Male, age 53, unknown 90.7
2667 Female, age 75, unknown 89.4
1944 Female, age 72, unknown 84.4
1817 Female, age 42, unknown 74.3
2316 Male, age 76, right hemisphere 65.2
2825 Male, age 18, unknown 63.8
1816 Male, age 51, unknown 59.3
2007 Male, age 72, unknown 56.2
2407 Male, age 75, both hemispheres 50.8
2273 Male, age 74, both hemispheres 42.4
2224 Female, age 72, unknown 41.7
Red nucleus
nTPM: 86.3
2503 Female, age 72, unknown 114.9
2725 Female, age 75, unknown 112.4
1821 Female, age 72, unknown 109.6
2823 Male, age 76, right hemisphere 108.4
2769 Male, age 72, unknown 87.7
1904 Male, age 53, unknown 84.8
2227 Male, age 72, unknown 84.8
2588 Male, age 74, left hemisphere 78.9
1954 Female, age 42, unknown 71.6
2584 Male, age 75, left hemisphere 70.3
1865 Male, age 51, unknown 69.0
2785 Male, age 18, unknown 42.7
Substantia nigra
nTPM: 738.6
2699 Male, age 18, unknown 2165.2
1916 Female, age 42, unknown 1633.0
2241 Male, age 72, unknown 939.8
1941 Male, age 53, unknown 928.2
1851 Male, age 51, unknown 830.7
2409 Female, age 72, unknown 425.3
1889 Female, age 72, unknown 161.1
2665 Male, age 74, both hemispheres 116.5
2590 Female, age 75, unknown 95.2
2583 Male, age 75, right hemisphere 91.2
Superior colliculus
nTPM: 77.7
2668 Female, age 75, unknown 121.3
2087 Female, age 72, unknown 94.2
1995 Male, age 72, unknown 90.0
1913 Female, age 42, unknown 76.7
1796 Male, age 53, unknown 74.4
2664 Male, age 75, both hemispheres 72.8
2587 Male, age 74, left hemisphere 72.5
1895 Male, age 76, right hemisphere 64.9
1839 Male, age 51, unknown 56.8
2261 Male, age 18, unknown 53.2
Ventral tegmental area
nTPM: 544.6
2218 Male, age 76, both hemispheres 1081.4
1915 Female, age 42, unknown 879.7
1942 Male, age 51, unknown 650.9
2410 Female, age 72, unknown 478.5
2223 Female, age 72, unknown 95.4
2021 Male, age 53, unknown 81.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 289.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 289.5
Samples: 139

Max nTPM: 1344.8
Min nTPM: 17.5
Std nTPM: 264.8
Median nTPM: 203.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1344.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1306.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1089.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1041.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1023.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 978.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 944.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 911.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 904.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 853.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 779.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.1
FF:10158-103A5 76 years, female 91.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 494.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 494.1
Samples: 4

Max nTPM: 852.9
Min nTPM: 31.6
Sample A Female 638.2
Sample B Female 453.7
Sample C Male 852.9
Sample D Male 31.6
Midbrain
nTPM: 76.8
Samples: 4

Max nTPM: 208.0
Min nTPM: 25.5
Sample A Female 46.3
Sample B Female 208.0
Sample C Male 25.5
Sample D Male 27.5
Periaqueductal gray
nTPM: 81.1
Samples: 3

Max nTPM: 100.5
Min nTPM: 55.3
Sample B Female 87.4
Sample C Male 55.3
Sample D Male 100.5
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 69.1
Min nTPM: 15.5
Sample A Female 28.7
Sample B Female 69.1
Sample C Male 15.5
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 430.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 430.7
Samples: 4

Max nTPM: 446.7
Min nTPM: 420.3
Sample A Male 422.7
Sample B Male 420.3
Sample C Female 446.7
Sample D Female 433.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
72103809 Antisense, RP_051017_03_D07, Mouse strain C57BL/6J (56 days, male) 1.0
69013627 Antisense, RP_050309_02_F10, Mouse strain C57BL/6J (56 days, male) 0.8

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