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  • RPL27A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1263.4 nTPM
HPA Brain:360.6 nTPM
GTEx:1263.4 nTPM
FANTOM5:67.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 293.8
1981 Female, age 72, midline 355.6
2565 Male, age 75, midline 327.5
2048 Male, age 55, midline 326.9
2194 Female, age 79, both hemispheres 237.7
2816 Male, age 47, midline 221.5
Cervical spinal cord, dorsal horn
nTPM: 303.8
2069 Male, age 47, both hemispheres 378.3
2173 Female, age 72, unknown 374.4
2296 Male, age 66, both hemispheres 332.3
1877 Male, age 55, unknown 302.8
2721 Male, age 90, both hemispheres 224.5
2297 Male, age 75, both hemispheres 210.6
Cervical spinal cord, ventral horn
nTPM: 360.6
2809 Male, age 90, both hemispheres 479.8
2098 Female, age 72, unknown 469.8
2480 Male, age 75, both hemispheres 448.0
2295 Male, age 66, both hemispheres 289.5
2068 Male, age 55, unknown 287.5
2820 Female, age 79, both hemispheres 188.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1263.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1263.4
Samples: 159

Max nTPM: 2439.6
Min nTPM: 456.7
Std nTPM: 407.8
Median nTPM: 1180.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2439.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2424.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2339.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2298.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2211.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2194.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2078.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2039.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2013.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1956.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1945.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1920.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1888.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1857.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1823.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1800.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1788.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1784.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1763.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1757.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1729.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1710.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1707.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1705.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1693.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1687.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1671.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1669.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1664.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1656.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1635.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1634.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1629.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1628.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1615.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1610.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1591.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1573.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1563.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1563.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1562.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1519.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1507.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1478.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1465.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1453.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1447.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1427.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1419.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1401.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1376.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1366.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1358.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1356.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1350.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1345.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1344.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1338.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1323.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1319.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1317.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1303.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1300.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1293.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1287.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1285.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1283.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1280.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1268.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1265.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1258.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1256.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1251.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1241.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1232.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1210.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1201.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1189.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1189.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1180.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1178.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1173.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1173.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1170.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1170.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1166.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1164.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1156.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1156.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1152.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1151.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1151.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1147.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1146.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1146.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1140.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1138.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1128.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1123.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1101.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1100.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1070.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1059.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1047.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1045.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1029.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1023.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1019.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1002.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 991.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 975.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 968.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 968.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 964.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 962.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 961.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 958.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 958.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 946.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 944.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 943.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 939.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 938.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 934.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 931.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 929.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 925.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 906.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 905.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 897.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 892.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 887.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 882.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 879.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 878.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 872.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 864.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 858.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 857.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 855.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 834.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 827.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 822.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 810.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 804.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 783.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 778.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 751.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 726.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 712.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 711.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 699.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 668.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 664.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 655.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 582.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 557.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 486.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 456.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 67.1
FF:10181-103D1 60 years, female 89.0
FF:10159-103A6 76 years, female 45.3

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