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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2119.1 nTPM
GTEx:2119.1 nTPM
FANTOM5:209.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060776Antibody HPA063379
Squamous epithelial cells MediumLow




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2119.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2119.1
Samples: 156

Max nTPM: 6435.3
Min nTPM: 1109.0
Std nTPM: 606.7
Median nTPM: 2028.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 6435.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3678.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3524.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3519.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3350.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3302.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3299.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3137.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3130.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2983.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2962.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2962.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2931.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2865.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2862.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2852.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2753.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2695.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2671.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2664.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2631.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2612.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2598.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2588.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2568.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2550.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2518.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2510.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2484.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2484.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2476.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2473.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2436.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2422.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2408.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2408.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2389.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2384.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2380.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2371.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2343.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2316.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2312.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2309.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2307.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2302.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2296.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2294.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2266.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2247.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2243.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2240.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2239.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2230.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2215.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2206.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2197.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2190.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2162.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2159.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2156.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2155.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2154.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2152.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2143.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2140.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2107.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2089.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2083.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2074.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2073.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2071.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2063.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2061.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2041.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2037.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2036.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2029.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2027.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2019.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1995.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1991.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1989.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1987.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1984.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1979.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1979.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1977.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1975.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1974.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1960.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1958.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1956.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1946.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1945.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1937.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1930.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 1928.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1919.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1910.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1902.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1890.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1855.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1838.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1826.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1825.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1815.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1801.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1800.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1798.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1795.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1794.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1792.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1791.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1790.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1788.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1784.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1763.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1731.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1717.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1695.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1674.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1672.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1670.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1668.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1647.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1629.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1626.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1609.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1603.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1603.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1601.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1590.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1588.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1583.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1582.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1558.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1543.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1534.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1532.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1513.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1512.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1502.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1467.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1463.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1451.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1445.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1438.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1401.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1383.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1381.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1367.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1182.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1175.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1156.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1109.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 209.5
FF:10204-103F6 68 years, female 209.5

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