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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:112.8 nTPM
HPA Brain:444.1 nTPM
GTEx:112.8 nTPM
FANTOM5:753.4 Scaled Tags Per Million
Pig:276.6 nTPM
Mouse:216.9 nTPM
Allen mouse:16.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

444.1
Sample id Sample description nTPM
Amygdala
nTPM: 335.6
2814 Male, age 76, right hemisphere 474.9
2517 Female, age 94, left hemisphere 336.5
1987 Female, age 91, left hemisphere 308.6
2695 Female, age 67, right hemisphere 287.5
2514 Male, age 75, right hemisphere 270.3
Basal amygdala
nTPM: 444.1
2243 Female, age 91, right hemisphere 567.0
2685 Female, age 94, left hemisphere 470.7
2110 Male, age 80, left hemisphere 459.0
1955 Male, age 76, both hemispheres 419.9
2827 Female, age 67, right hemisphere 405.8
2609 Male, age 75, right hemisphere 342.4
Central amygdala
nTPM: 384.2
1905 Male, age 76, both hemispheres 443.7
2826 Female, age 94, left hemisphere 421.8
2239 Male, age 80, left hemisphere 421.0
2515 Male, age 75, right hemisphere 324.6
2701 Female, age 91, right hemisphere 309.8
Corticomedial amygdala
nTPM: 415.4
2242 Female, age 91, right hemisphere 503.1
2829 Male, age 80, left hemisphere 496.2
2240 Male, age 76, both hemispheres 415.3
2535 Female, age 67, right hemisphere 405.7
2429 Female, age 94, left hemisphere 373.3
2428 Male, age 75, right hemisphere 299.0
Lateral amygdala
nTPM: 383.2
2534 Female, age 94, left hemisphere 485.1
1883 Male, age 76, both hemispheres 475.0
2256 Male, age 80, left hemisphere 388.7
2830 Female, age 67, right hemisphere 345.4
2255 Female, age 91, right hemisphere 315.0
2516 Male, age 75, right hemisphere 290.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.8
Samples: 152

Max nTPM: 262.7
Min nTPM: 4.6
Std nTPM: 48.8
Median nTPM: 107.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 262.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 238.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 224.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 217.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 210.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 207.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 205.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 203.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 193.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 190.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 187.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 184.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 183.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 182.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 178.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 178.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 176.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 173.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 167.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 167.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 163.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 163.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 162.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 161.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 159.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 158.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 156.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 155.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 155.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 153.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 150.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 150.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 148.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 145.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 144.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 143.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 141.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 141.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 140.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 140.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 140.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 140.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 130.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 130.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 129.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 127.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 123.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 121.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 119.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 117.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 115.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 114.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 114.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 111.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 110.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 106.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 106.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 105.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 103.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 98.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 94.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 93.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 92.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 91.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 89.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 88.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 88.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 86.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 86.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 85.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 80.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 80.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 78.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 77.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 77.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 76.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 76.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 75.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 73.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 71.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 68.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 61.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 61.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 57.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 53.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 50.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 48.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 47.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 44.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 42.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 39.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 29.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

753.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 753.4
FF:10151-102I7 76 years, female 753.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

276.6
Pig sample Sample description nTPM
Amygdala
nTPM: 276.6
Samples: 4

Max nTPM: 343.7
Min nTPM: 208.8
Sample A Female 343.7
Sample B Female 208.8
Sample C Male 264.4
Sample D Male 289.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 216.9
Samples: 4

Max nTPM: 242.0
Min nTPM: 190.5
Sample A Male 222.6
Sample B Male 190.5
Sample C Female 242.0
Sample D Female 212.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.6
71570736 Antisense, RP_050505_01_H05, Mouse strain C57BL/6J (56 days, male) 17.7
76115734 Antisense, RP_060620_02_C02, Mouse strain C57BL/6J (56 days, male) 15.4

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