We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAP1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MAP1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.6 nTPM
HPA Brain:332.3 nTPM
GTEx:61.6 nTPM
FANTOM5:486.5 Scaled Tags Per Million
Pig:364.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 293.4
2194 Female, age 79, both hemispheres 393.9
2816 Male, age 47, midline 283.3
2565 Male, age 75, midline 281.8
1981 Female, age 72, midline 263.6
2048 Male, age 55, midline 244.6
Cervical spinal cord, dorsal horn
nTPM: 294.4
2296 Male, age 66, both hemispheres 341.7
2173 Female, age 72, unknown 300.5
2297 Male, age 75, both hemispheres 294.2
2721 Male, age 90, both hemispheres 287.8
1877 Male, age 55, unknown 275.9
2069 Male, age 47, both hemispheres 266.4
Cervical spinal cord, ventral horn
nTPM: 332.3
2820 Female, age 79, both hemispheres 503.1
2480 Male, age 75, both hemispheres 369.3
2068 Male, age 55, unknown 355.3
2809 Male, age 90, both hemispheres 282.3
2295 Male, age 66, both hemispheres 262.6
2098 Female, age 72, unknown 221.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 61.6
Samples: 159

Max nTPM: 162.5
Min nTPM: 26.0
Std nTPM: 18.4
Median nTPM: 59.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 162.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 116.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 110.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 110.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 107.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 103.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 93.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 92.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 89.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 88.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 87.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 86.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 84.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 83.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 82.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 82.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 80.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 78.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 77.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 77.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 77.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 77.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 76.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 76.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 75.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 75.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 74.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 74.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 74.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 73.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 72.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 72.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 72.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 72.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 72.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 71.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 69.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 69.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 69.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 68.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 68.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 67.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 67.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 66.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 66.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 65.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 65.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 65.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 65.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 65.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 64.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 64.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 64.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 64.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 64.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 64.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 64.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 64.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 64.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 63.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 63.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 63.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 62.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 62.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 62.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 61.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 61.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 60.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 59.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 59.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 58.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 58.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 58.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 58.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 57.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 56.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 56.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 56.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 53.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 53.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 53.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 53.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 52.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 52.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 51.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 51.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 51.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 50.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 50.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 49.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 49.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 48.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 48.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 48.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 48.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 48.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 48.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 48.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 47.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 47.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 47.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 47.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 47.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 46.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 46.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 46.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 46.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 46.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 45.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 44.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 44.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 43.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 41.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 41.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 41.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 41.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 41.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 37.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 32.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 32.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 28.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 27.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

486.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 486.5
FF:10181-103D1 60 years, female 651.6
FF:10159-103A6 76 years, female 321.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

364.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 254.7
Samples: 4

Max nTPM: 370.5
Min nTPM: 148.1
Sample A Female 370.5
Sample B Female 184.3
Sample C Male 148.1
Sample D Male 315.7
Ventral spinal cord
nTPM: 364.8
Samples: 4

Max nTPM: 458.2
Min nTPM: 265.9
Sample A Female 458.2
Sample B Female 355.0
Sample C Male 380.1
Sample D Male 265.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org