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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:776.4 nTPM
HPA:684.2 nTPM
GTEx:776.4 nTPM
FANTOM5:2013.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040534Antibody HPA057351Antibody CAB007795
Glandular cells HighHighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

684.2
overview
Male, age 65
Small intestine sample 232
nTPM: 898.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 683
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 592.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 563.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

776.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 776.4
Samples: 187

Max nTPM: 1331.1
Min nTPM: 471.3
Std nTPM: 143.8
Median nTPM: 755.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1331.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1228.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1221.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1185.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1094.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1093.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1082.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1081.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1080.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1080.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1072.9
GTEX-1192X-2526-SM-59868 50-59 years, male 1061.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1053.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1038.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 979.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 976.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 975.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 972.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 968.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 966.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 953.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 944.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 944.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 941.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 938.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 930.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 929.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 922.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 909.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 909.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 901.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 895.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 895.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 891.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 884.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 882.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 877.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 876.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 874.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 868.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 864.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 864.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 860.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 860.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 859.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 856.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 856.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 845.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 842.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 842.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 840.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 836.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 832.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 828.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 827.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 826.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 826.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 822.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 819.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 818.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 816.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 815.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 812.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 811.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 811.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 807.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 806.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 805.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 803.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 800.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 791.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 788.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 786.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 785.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 781.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 779.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 778.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 775.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 773.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 767.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 767.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 766.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 766.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 764.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 763.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 760.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 760.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 760.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 760.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 758.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 757.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 757.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 756.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 755.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 755.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 754.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 753.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 742.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 741.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 741.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 741.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 739.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 738.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 738.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 737.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 735.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 732.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 732.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 731.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 731.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 727.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 727.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 725.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 723.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 723.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 716.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 716.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 715.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 711.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 710.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 708.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 707.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 702.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 702.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 700.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 694.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 692.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 688.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 688.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 687.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 683.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 683.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 681.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 681.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 680.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 679.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 679.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 677.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 668.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 668.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 667.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 667.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 667.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 666.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 664.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 663.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 663.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 659.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 658.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 657.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 657.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 656.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 655.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 654.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 653.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 652.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 650.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 647.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 646.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 644.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 644.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 642.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 635.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 631.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 629.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 629.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 629.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 628.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 625.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 624.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 617.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 609.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 609.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 604.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 603.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 603.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 603.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 597.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 594.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 583.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 581.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 576.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 568.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 537.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 533.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 516.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 471.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2013.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2013.3
FF:10024-101D6 15,40,85 years, mixed 2013.3

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