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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:553.9 nTPM
HPA Brain:696.2 nTPM
GTEx:553.9 nTPM
FANTOM5:594.7 Scaled Tags Per Million
Pig:567.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

696.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 585.9
2565 Male, age 75, midline 700.0
2194 Female, age 79, both hemispheres 634.7
1981 Female, age 72, midline 570.8
2816 Male, age 47, midline 544.3
2048 Male, age 55, midline 479.7
Cervical spinal cord, dorsal horn
nTPM: 563.9
2296 Male, age 66, both hemispheres 675.7
2173 Female, age 72, unknown 623.8
2069 Male, age 47, both hemispheres 593.6
1877 Male, age 55, unknown 533.1
2721 Male, age 90, both hemispheres 491.7
2297 Male, age 75, both hemispheres 465.2
Cervical spinal cord, ventral horn
nTPM: 696.2
2480 Male, age 75, both hemispheres 840.3
2809 Male, age 90, both hemispheres 796.1
2068 Male, age 55, unknown 686.1
2820 Female, age 79, both hemispheres 649.7
2295 Male, age 66, both hemispheres 630.3
2098 Female, age 72, unknown 574.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

553.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 553.9
Samples: 159

Max nTPM: 829.8
Min nTPM: 364.2
Std nTPM: 101.7
Median nTPM: 537.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 829.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 827.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 826.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 822.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 801.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 754.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 753.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 749.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 740.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 736.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 721.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 718.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 711.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 709.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 704.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 695.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 695.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 682.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 679.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 679.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 676.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 674.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 670.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 664.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 664.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 663.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 661.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 658.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 652.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 645.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 643.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 642.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 634.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 631.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 630.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 629.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 625.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 625.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 622.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 618.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 607.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 605.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 604.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 603.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 603.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 600.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 598.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 595.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 592.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 590.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 590.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 587.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 584.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 584.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 580.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 573.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 571.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 571.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 571.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 570.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 569.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 568.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 566.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 565.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 561.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 557.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 557.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 556.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 556.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 555.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 554.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 553.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 552.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 549.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 547.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 546.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 545.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 544.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 542.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 537.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 537.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 535.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 531.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 531.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 530.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 529.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 528.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 527.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 527.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 526.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 524.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 522.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 522.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 521.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 520.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 518.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 515.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 515.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 509.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 509.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 507.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 505.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 504.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 503.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 502.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 502.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 502.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 500.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 499.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 498.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 498.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 498.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 498.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 492.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 492.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 489.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 489.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 488.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 488.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 487.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 484.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 482.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 478.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 478.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 472.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 466.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 464.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 463.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 462.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 461.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 460.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 459.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 459.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 456.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 456.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 455.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 455.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 455.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 453.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 452.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 447.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 444.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 439.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 438.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 426.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 422.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 420.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 420.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 407.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 398.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 398.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 395.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 393.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 387.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 384.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 381.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 373.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 365.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 364.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

594.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 594.7
FF:10159-103A6 76 years, female 643.4
FF:10181-103D1 60 years, female 545.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

567.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 567.1
Samples: 4

Max nTPM: 757.0
Min nTPM: 469.8
Sample A Female 469.8
Sample B Female 516.6
Sample C Male 757.0
Sample D Male 525.0
Ventral spinal cord
nTPM: 555.2
Samples: 4

Max nTPM: 645.3
Min nTPM: 491.2
Sample A Female 491.2
Sample B Female 571.1
Sample C Male 645.3
Sample D Male 513.1

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