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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:129.7 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:24.2 nTPM
Allen mouse:3.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 104.0
2396 Male, age 61, right hemisphere 117.4
2497 Male, age 66, unknown 98.6
2032 Female, age 42, unknown 96.0
Centromedial thalamic nucleus
nTPM: 72.4
2401 Male, age 76, right hemisphere 106.5
2279 Female, age 85, left hemisphere 38.2
Habenula
nTPM: 129.7
2276 Male, age 66, unknown 155.8
2203 Male, age 61, left hemisphere 143.6
1957 Male, age 80, both hemispheres 123.7
2252 Male, age 62, unknown 95.7
Lateral geniculate body
nTPM: 88.8
2106 Female, age 67, right hemisphere 131.9
2857 Male, age 74, right hemisphere 125.1
2399 Male, age 61, left hemisphere 98.5
1953 Male, age 62, unknown 90.8
2035 Female, age 72, unknown 88.9
2659 Male, age 66, unknown 80.7
2841 Male, age 80, both hemispheres 48.5
2575 Female, age 94, right hemisphere 46.2
Lateral thalamic nuclei
nTPM: 92.0
1903 Male, age 76, left hemisphere 130.3
2661 Female, age 72, unknown 121.6
2577 Male, age 74, both hemispheres 95.2
2573 Female, age 94, left hemisphere 60.1
2765 Female, age 67, both hemispheres 52.7
Medial dorsal thalamic nucleus
nTPM: 119.0
2498 Male, age 66, unknown 151.2
1859 Male, age 76, both hemispheres 142.4
2283 Male, age 80, right hemisphere 141.0
1971 Male, age 61, right hemisphere 138.0
2492 Male, age 75, right hemisphere 137.1
2026 Male, age 62, unknown 133.6
1810 Male, age 48, unknown 121.7
2576 Male, age 74, both hemispheres 121.4
2572 Female, age 94, right hemisphere 106.5
2660 Female, age 72, unknown 99.2
1930 Female, age 42, unknown 92.7
2402 Female, age 67, both hemispheres 82.2
2039 Female, age 72, unknown 80.1
Medial geniculate body
nTPM: 101.0
1811 Female, age 42, unknown 155.3
2207 Male, age 80, right hemisphere 121.4
2657 Male, age 74, right hemisphere 117.8
2650 Female, age 94, left hemisphere 110.9
2217 Female, age 72, unknown 86.6
2571 Male, age 75, right hemisphere 64.3
2049 Male, age 76, both hemispheres 50.3
Nucleus reuniens
nTPM: 51.2
2212 Female, age 67, left hemisphere 71.7
2205 Male, age 80, left hemisphere 56.1
2210 Female, age 85, left hemisphere 25.8
Nucleus rhomboideus
nTPM: 72.5
2206 Male, age 80, both hemispheres 139.4
2280 Female, age 85, left hemisphere 39.5
2213 Female, age 67, left hemisphere 38.7
Posterior thalamic nucleus
nTPM: 103.0
2655 Male, age 74, right hemisphere 128.3
2266 Male, age 76, right hemisphere 127.1
2495 Female, age 67, right hemisphere 85.2
2649 Female, age 94, both hemispheres 71.6
Pulvinar
nTPM: 108.7
2582 Female, age 72, unknown 148.9
2724 Male, age 74, right hemisphere 113.1
2499 Male, age 66, unknown 112.5
1929 Male, age 48, unknown 110.6
2496 Female, age 67, right hemisphere 105.3
1932 Male, age 80, right hemisphere 105.2
2214 Male, age 76, right hemisphere 104.0
1972 Male, age 62, unknown 102.5
2398 Male, age 61, left hemisphere 97.7
1899 Female, age 42, unknown 86.9
Subthalamic nucleus
nTPM: 46.1
2406 Female, age 72, unknown 61.3
2658 Male, age 74, both hemispheres 55.2
2275 Male, age 66, unknown 49.9
2779 Female, age 42, unknown 47.1
2282 Male, age 61, both hemispheres 43.5
2216 Male, age 48, unknown 43.4
2124 Male, age 62, unknown 35.6
2056 Female, age 72, unknown 32.6
Ventral posterolateral thalamic nucleus
nTPM: 109.5
2581 Female, age 72, unknown 137.3
2197 Male, age 80, both hemispheres 134.1
2578 Male, age 74, both hemispheres 112.9
2740 Male, age 76, right hemisphere 110.8
2397 Male, age 61, right hemisphere 87.7
2570 Male, age 75, right hemisphere 74.4
Ventral posteromedial thalamic nucleus
nTPM: 124.7
2758 Male, age 80, both hemispheres 187.6
2202 Male, age 61, left hemisphere 153.2
2653 Male, age 74, both hemispheres 120.7
2127 Male, age 76, right hemisphere 94.1
2281 Male, age 75, right hemisphere 68.0
Ventral thalamic nuclei
nTPM: 94.8
2285 Male, age 62, unknown 125.7
1860 Male, age 76, both hemispheres 115.0
2858 Female, age 72, unknown 111.3
1912 Female, age 42, unknown 108.7
1845 Male, age 48, unknown 89.8
2204 Male, age 80, both hemispheres 89.3
2652 Male, age 74, left hemisphere 81.7
2580 Male, age 66, unknown 75.2
2291 Female, age 72, unknown 56.9
Zona incerta
nTPM: 61.4
2208 Male, age 80, right hemisphere 110.5
2663 Female, age 72, unknown 86.1
2822 Male, age 74, right hemisphere 44.5
2403 Male, age 62, unknown 36.7
2215 Male, age 66, unknown 29.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 38.7
FF:10154-103A1 76 years, female 38.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.9
Pig sample Sample description nTPM
Thalamus
nTPM: 34.0
Samples: 4

Max nTPM: 57.9
Min nTPM: 9.6
Sample A Female 57.9
Sample B Female 27.7
Sample C Male 40.6
Sample D Male 9.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 24.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 23.0
Sample A Male 24.5
Sample B Male 23.1
Sample C Female 23.0
Sample D Female 26.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.1
72001866 Antisense, RP_050915_02_D08, Mouse strain C57BL/6J (56 days, male) 3.1

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