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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:8073.5 nTPM
HPA Brain:4014.7 nTPM
GTEx:8073.5 nTPM
FANTOM5:156.1 Scaled Tags Per Million
Mouse:2461.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4014.7
Sample id Sample description nTPM
Amygdala
nTPM: 3655.6
2514 Male, age 75, right hemisphere 4123.0
2695 Female, age 67, right hemisphere 3880.7
2814 Male, age 76, right hemisphere 3778.8
2517 Female, age 94, left hemisphere 3458.4
1987 Female, age 91, left hemisphere 3037.2
Basal amygdala
nTPM: 3820.3
2609 Male, age 75, right hemisphere 4819.1
2827 Female, age 67, right hemisphere 4209.0
2110 Male, age 80, left hemisphere 3831.4
2243 Female, age 91, right hemisphere 3642.7
1955 Male, age 76, both hemispheres 3219.2
2685 Female, age 94, left hemisphere 3200.1
Central amygdala
nTPM: 4009.1
2826 Female, age 94, left hemisphere 5619.9
2515 Male, age 75, right hemisphere 4476.5
2239 Male, age 80, left hemisphere 3920.0
1905 Male, age 76, both hemispheres 3266.3
2701 Female, age 91, right hemisphere 2762.9
Corticomedial amygdala
nTPM: 3203.8
2829 Male, age 80, left hemisphere 3618.3
2428 Male, age 75, right hemisphere 3551.8
2242 Female, age 91, right hemisphere 3273.2
2240 Male, age 76, both hemispheres 3192.0
2535 Female, age 67, right hemisphere 2940.3
2429 Female, age 94, left hemisphere 2646.9
Lateral amygdala
nTPM: 4014.7
2830 Female, age 67, right hemisphere 5146.9
2516 Male, age 75, right hemisphere 4840.8
2534 Female, age 94, left hemisphere 4283.5
2256 Male, age 80, left hemisphere 3625.3
1883 Male, age 76, both hemispheres 3165.3
2255 Female, age 91, right hemisphere 3026.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8073.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 8073.5
Samples: 152

Max nTPM: 23198.2
Min nTPM: 2796.4
Std nTPM: 2820.6
Median nTPM: 7552.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 23198.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 19782.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 16210.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15807.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 14537.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 14111.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13429.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 13400.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 13172.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 12650.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 12189.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 12109.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 12044.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 12000.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 11919.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 11777.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 11292.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 11232.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 10712.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 10666.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 10641.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 10478.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 10466.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 9976.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 9927.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9873.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 9853.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9659.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 9593.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 9556.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 9553.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 9514.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9404.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 9355.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 9284.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 9202.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 9195.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 9191.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 9112.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 9034.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8938.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 8931.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 8890.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 8783.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 8765.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 8707.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 8633.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 8588.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8527.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 8489.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 8430.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8421.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 8416.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 8395.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 8297.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 8223.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8222.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8191.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 8179.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8137.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 8084.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8001.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 7948.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 7909.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 7891.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 7887.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 7827.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7724.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 7712.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7695.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 7631.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 7629.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 7626.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 7616.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 7563.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 7556.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 7548.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 7528.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 7423.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7390.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7372.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 7266.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7251.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 7239.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 7191.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 7190.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 7185.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 7176.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 7126.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 7055.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 7024.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 7011.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 6983.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6856.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6792.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 6779.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 6763.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 6743.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 6723.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6667.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6649.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 6635.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 6635.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 6627.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6576.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 6565.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 6512.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 6455.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 6454.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 6446.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 6434.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 6393.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6392.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 6389.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6385.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 6383.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6357.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 6302.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 6240.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 6227.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6142.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 6133.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 6120.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 6099.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 6022.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 5879.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5857.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 5802.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 5746.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5715.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5641.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 5563.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 5561.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5538.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 5480.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 5429.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 5404.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5345.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 5260.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 5178.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 5114.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5097.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 5005.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 4862.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4808.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 4733.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 4588.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 4459.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 4424.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 4375.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 4026.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2796.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

156.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 156.1
FF:10151-102I7 76 years, female 156.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2461.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 2461.0
Samples: 4

Max nTPM: 3091.6
Min nTPM: 2170.8
Sample A Male 2170.8
Sample B Male 2375.2
Sample C Female 3091.6
Sample D Female 2206.3

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