We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FTH1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • FTH1
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3063.1 nTPM
GTEx:3063.1 nTPM
FANTOM5:179.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB008623
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3063.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 3063.1
Samples: 156

Max nTPM: 8558.8
Min nTPM: 866.9
Std nTPM: 1410.6
Median nTPM: 2799.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 8558.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 8488.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 8143.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 6742.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 6395.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 6082.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 5814.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 5710.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 5647.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 5538.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 5489.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 5389.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 5229.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 5193.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 5136.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 5135.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 4955.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 4884.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 4818.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 4730.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 4619.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 4598.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 4397.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 4285.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 4230.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 4064.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 4015.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 4014.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 4005.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 3970.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3902.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 3883.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3879.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 3877.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3834.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3812.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3734.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3703.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 3651.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3630.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3588.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 3572.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 3536.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3527.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3508.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 3481.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 3471.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3421.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 3384.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 3369.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3332.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 3274.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 3270.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3261.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 3243.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 3222.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 3194.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3153.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 3137.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3111.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 3097.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 3092.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3070.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 3061.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 3047.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 3007.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2992.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2960.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2956.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2934.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2898.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2885.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2876.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2875.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2827.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2822.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2815.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2809.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2790.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2763.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2761.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2757.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2729.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2721.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2719.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2697.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2683.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2681.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2673.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2644.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2591.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2579.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2566.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2550.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2488.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2474.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2452.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2425.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2418.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2414.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2404.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 2404.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2390.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2362.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2358.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2355.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2322.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2240.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2239.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2232.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 2216.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2210.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2190.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2179.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2178.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2157.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2156.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2143.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2103.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 2048.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2036.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2026.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1995.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1968.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1931.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1930.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1893.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1875.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1868.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1812.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1799.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1736.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1721.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1713.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1700.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1630.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1630.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1564.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1560.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1546.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1538.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1518.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1508.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1496.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1486.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1474.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1472.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1336.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1315.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1302.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1296.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1245.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1192.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1113.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 968.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 866.9
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 179.0
FF:10204-103F6 68 years, female 179.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org