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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4210.4 nTPM
HPA:2327.3 nTPM
GTEx:4210.4 nTPM
FANTOM5:213.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB008623
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2327.3
overview
Male, age 65
Small intestine sample 232
nTPM: 2364.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2703.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2128.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2112.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4210.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 4210.4
Samples: 187

Max nTPM: 12041.1
Min nTPM: 1456.3
Std nTPM: 1934.0
Median nTPM: 3787.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 12041.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 10303.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 9280.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 8890.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 8709.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 8696.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 8593.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 8565.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 8304.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 7964.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 7887.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 7857.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 7761.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 7706.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 7562.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 7518.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 7449.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 7343.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 7216.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7192.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 6838.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 6741.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 6696.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 6674.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 6670.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 6539.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 6529.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 6462.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6372.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 6231.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 6208.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 6179.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 6051.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 6020.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 5963.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 5826.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5824.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 5724.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 5692.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 5595.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 5537.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 5384.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 5364.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5241.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 5214.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5127.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 5088.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 5031.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4998.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 4855.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 4837.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4818.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 4777.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 4754.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4710.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 4701.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 4675.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 4656.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4595.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 4528.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4502.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 4487.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 4475.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4384.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 4376.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 4372.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 4368.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 4338.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 4317.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 4306.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4292.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4203.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 4148.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4139.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 4108.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 4107.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 4092.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4088.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 4069.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 4040.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 4006.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3980.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 3965.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3960.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3951.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 3921.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3904.3
GTEX-1192X-2526-SM-59868 50-59 years, male 3896.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3888.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3877.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3860.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 3822.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3810.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3787.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3767.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3761.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 3693.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3687.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3682.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 3644.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3603.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3554.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3550.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 3544.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3504.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3472.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3467.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 3445.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3418.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3380.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3372.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3328.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3301.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3289.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3285.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3283.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3277.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 3271.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3254.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3222.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 3202.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3197.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3181.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3172.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3161.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3139.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3132.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3128.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3116.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3107.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3036.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3036.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 3015.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 3011.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3007.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3003.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2985.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2979.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2937.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2880.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2840.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2828.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2822.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2809.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2769.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2763.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2753.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2733.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2710.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2700.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2684.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2684.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2673.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2640.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2593.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2524.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2524.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2512.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2454.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2432.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2424.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2422.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2415.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2322.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2214.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2192.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2182.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2128.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2074.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1994.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1946.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1914.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1865.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1849.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1841.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1838.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1838.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1824.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1741.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1728.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1691.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1683.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1664.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1637.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1577.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1475.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1456.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 213.2
FF:10024-101D6 15,40,85 years, mixed 213.2

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