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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2989.6 nTPM
GTEx:5833.6 nTPM
FANTOM5:152.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB008623
Glial cells High
Neuronal cells Medium


HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2989.6
Sample id Sample description nTPM
Hippocampus
nTPM: 2989.6
1855 Male, age 76, left hemisphere 3313.3
2529 Female, age 94, left hemisphere 3148.6
2621 Female, age 67, right hemisphere 3118.5
1898 Male, age 80, left hemisphere 3009.2
2148 Female, age 91, left hemisphere 2737.2
1911 Female, age 85, right hemisphere 2610.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5833.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5833.6
Samples: 197

Max nTPM: 15498.1
Min nTPM: 2774.1
Std nTPM: 2092.9
Median nTPM: 5375.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 15498.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 13156.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 12357.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 11916.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 11201.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 10789.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 10599.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 10449.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 10020.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 9984.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 9890.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 9843.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 9698.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 9590.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 9091.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 9074.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 9034.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 8972.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 8903.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 8568.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 8561.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 8453.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 8427.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 8421.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 8371.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 8273.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 8213.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 7785.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 7780.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 7702.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 7685.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7680.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 7656.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 7533.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 7402.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 7370.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7361.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 7315.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 7226.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 7158.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 7153.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 7111.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 7104.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 6979.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 6940.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6904.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 6858.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 6828.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 6821.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 6814.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 6781.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 6771.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 6758.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 6723.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 6719.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 6585.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 6577.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 6552.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 6537.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 6382.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 6305.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 6272.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 6263.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 6262.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 6228.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 6204.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 6142.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 6141.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 6094.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 6094.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 6081.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 6072.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 6028.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 6024.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 6016.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 5969.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 5964.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 5932.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5905.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5882.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 5816.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 5812.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 5810.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 5780.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 5764.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 5760.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 5719.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 5695.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 5680.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 5674.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 5630.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 5600.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 5485.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 5479.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 5459.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 5421.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 5394.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 5383.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 5375.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 5362.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 5355.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 5340.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 5325.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 5231.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 5188.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 5135.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 5133.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 5071.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 5062.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 5040.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 5034.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 4998.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 4980.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 4971.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 4960.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 4955.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 4938.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 4922.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 4909.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 4906.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 4881.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 4846.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 4819.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4749.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 4747.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 4740.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 4729.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 4718.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 4713.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 4702.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 4695.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 4692.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 4680.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 4674.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 4638.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 4631.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 4610.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 4595.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 4571.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 4566.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 4552.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 4539.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 4504.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 4490.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 4487.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4473.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 4466.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 4410.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 4392.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 4341.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 4327.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 4298.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 4291.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 4289.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 4286.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 4275.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 4274.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 4240.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 4178.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 4162.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 4104.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 4077.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 4064.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 4060.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4044.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 4032.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 4017.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 4010.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 3996.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 3939.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 3830.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3791.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3732.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 3709.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 3661.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 3646.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 3602.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 3593.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 3578.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 3546.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 3494.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 3493.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 3489.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 3445.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 3439.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 3433.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 3395.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 3319.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 3233.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 3106.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 3089.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 3074.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 2999.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 2932.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 2909.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 2871.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 2774.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 152.9
FF:10169-103B7 60 years, female 171.3
FF:10153-102I9 76 years, female 134.4

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