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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:191.3 nTPM
HPA Brain:210.4 nTPM
GTEx:191.3 nTPM
FANTOM5:164.7 Scaled Tags Per Million
Pig:96.4 nTPM
Mouse:11.3 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.4
Sample id Sample description nTPM
Amygdala
nTPM: 210.4
2695 Female, age 67, right hemisphere 235.4
2514 Male, age 75, right hemisphere 229.0
2814 Male, age 76, right hemisphere 213.8
1987 Female, age 91, left hemisphere 201.6
2517 Female, age 94, left hemisphere 172.4
Basal amygdala
nTPM: 167.9
2609 Male, age 75, right hemisphere 199.6
1955 Male, age 76, both hemispheres 183.5
2110 Male, age 80, left hemisphere 182.0
2243 Female, age 91, right hemisphere 160.5
2685 Female, age 94, left hemisphere 148.7
2827 Female, age 67, right hemisphere 133.1
Central amygdala
nTPM: 183.9
2515 Male, age 75, right hemisphere 216.9
1905 Male, age 76, both hemispheres 194.4
2239 Male, age 80, left hemisphere 173.5
2701 Female, age 91, right hemisphere 168.5
2826 Female, age 94, left hemisphere 166.2
Corticomedial amygdala
nTPM: 170.0
2428 Male, age 75, right hemisphere 217.8
2240 Male, age 76, both hemispheres 181.7
2429 Female, age 94, left hemisphere 171.2
2242 Female, age 91, right hemisphere 169.2
2829 Male, age 80, left hemisphere 164.9
2535 Female, age 67, right hemisphere 115.0
Lateral amygdala
nTPM: 177.3
2516 Male, age 75, right hemisphere 219.7
1883 Male, age 76, both hemispheres 187.5
2256 Male, age 80, left hemisphere 176.5
2830 Female, age 67, right hemisphere 168.1
2255 Female, age 91, right hemisphere 161.6
2534 Female, age 94, left hemisphere 150.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 191.3
Samples: 152

Max nTPM: 371.9
Min nTPM: 93.0
Std nTPM: 46.1
Median nTPM: 188.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 371.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 349.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 321.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 294.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 284.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 281.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 275.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 255.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 250.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 246.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 240.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 239.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 239.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 237.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 237.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 236.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 235.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 234.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 234.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 233.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 233.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 233.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 233.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 232.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 232.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 231.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 231.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 230.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 229.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 227.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 227.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 226.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 224.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 224.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 222.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 222.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 221.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 221.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 220.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 220.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 220.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 219.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 218.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 217.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 215.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 214.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 213.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 213.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 212.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 212.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 208.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 206.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 206.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 205.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 203.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 203.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 201.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 199.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 199.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 196.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 195.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 193.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 193.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 192.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 191.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 190.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 190.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 190.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 189.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 187.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 187.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 183.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 183.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 183.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 182.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 180.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 180.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 180.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 179.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 179.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 176.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 174.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 173.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 173.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 172.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 172.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 170.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 169.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 169.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 164.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 164.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 162.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 161.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 160.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 159.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 159.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 158.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 157.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 157.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 157.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 156.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 155.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 155.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 154.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 154.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 154.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 154.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 154.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 153.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 153.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 152.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 150.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 150.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 149.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 147.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 141.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 133.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 130.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 128.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 117.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 114.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 112.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 103.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 164.7
FF:10151-102I7 76 years, female 164.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.4
Pig sample Sample description nTPM
Amygdala
nTPM: 96.5
Samples: 4

Max nTPM: 110.3
Min nTPM: 84.9
Sample A Female 99.2
Sample B Female 110.3
Sample C Male 91.4
Sample D Male 84.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 11.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.3
Sample A Male 12.9
Sample B Male 12.3
Sample C Female 11.7
Sample D Female 8.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
69816834 Antisense, RP_050510_02_A03, Mouse strain C57BL/6J (56 days, male) 0.3
Cortical subplate
Expression energy: 0.3
69816834 Antisense, RP_050510_02_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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