MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:209.2 nTPM
HPA Brain:230.1 nTPM
GTEx:209.2 nTPM
FANTOM5:221.6 Scaled Tags Per Million
Pig:153.4 nTPM
Mouse:16.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 230.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 209.0
1870 Female, age 42, unknown 258.9
1833 Male, age 53, unknown 237.1
1830 Male, age 51, unknown 224.3
2411 Female, age 72, unknown 221.3
2828 Female, age 72, unknown 216.8
2019 Male, age 18, unknown 201.5
1827 Male, age 72, unknown 193.6
2586 Male, age 75, left hemisphere 181.3
2666 Male, age 74, left hemisphere 178.6
2219 Male, age 76, both hemispheres 176.8
Dorsal raphe nucleus
nTPM: 222.5
2016 Female, age 72, unknown 258.0
2750 Male, age 76, both hemispheres 227.6
1828 Male, age 53, unknown 216.7
2298 Female, age 72, unknown 213.4
2047 Male, age 72, unknown 196.8
Inferior colliculus
nTPM: 206.7
1848 Female, age 42, unknown 218.5
2097 Female, age 72, unknown 211.5
1890 Male, age 53, unknown 204.5
2849 Male, age 72, unknown 192.3
Median raphe nucleus
nTPM: 195.5
2220 Male, age 76, midline 195.5
Periaquaductal grey, anterior
nTPM: 194.0
2502 Female, age 75, unknown 203.1
1947 Male, age 18, unknown 196.3
1795 Male, age 51, unknown 182.7
Periaquaductal grey, dorsal
nTPM: 220.4
2850 Male, age 76, both hemispheres 247.3
2464 Female, age 72, unknown 217.7
1840 Male, age 53, unknown 208.6
1831 Male, age 72, unknown 208.1
Periaquaductal grey, lateral
nTPM: 215.9
2140 Male, age 76, both hemispheres 234.6
2053 Male, age 18, unknown 222.9
2272 Male, age 74, both hemispheres 190.4
Pretectal area
nTPM: 197.1
2316 Male, age 76, right hemisphere 228.8
2273 Male, age 74, both hemispheres 218.8
2224 Female, age 72, unknown 218.0
1815 Male, age 53, unknown 210.9
2667 Female, age 75, unknown 201.3
1817 Female, age 42, unknown 200.5
2825 Male, age 18, unknown 197.3
2407 Male, age 75, both hemispheres 182.0
1944 Female, age 72, unknown 180.3
1816 Male, age 51, unknown 167.8
2007 Male, age 72, unknown 163.0
Red nucleus
nTPM: 230.1
1954 Female, age 42, unknown 275.5
1904 Male, age 53, unknown 268.1
1865 Male, age 51, unknown 261.5
1821 Female, age 72, unknown 252.5
2769 Male, age 72, unknown 248.6
2227 Male, age 72, unknown 245.8
2503 Female, age 72, unknown 244.5
2823 Male, age 76, right hemisphere 241.3
2785 Male, age 18, unknown 201.1
2725 Female, age 75, unknown 191.3
2588 Male, age 74, left hemisphere 177.3
2584 Male, age 75, left hemisphere 153.9
Substantia nigra
nTPM: 206.8
2699 Male, age 18, unknown 260.8
2241 Male, age 72, unknown 222.1
2409 Female, age 72, unknown 218.8
2590 Female, age 75, unknown 216.5
1851 Male, age 51, unknown 210.7
1889 Female, age 72, unknown 204.3
2665 Male, age 74, both hemispheres 201.3
1916 Female, age 42, unknown 194.0
2583 Male, age 75, right hemisphere 177.6
1941 Male, age 53, unknown 161.6
Superior colliculus
nTPM: 211.1
1913 Female, age 42, unknown 279.7
1995 Male, age 72, unknown 267.0
2668 Female, age 75, unknown 218.1
2587 Male, age 74, left hemisphere 203.5
1839 Male, age 51, unknown 203.0
1895 Male, age 76, right hemisphere 197.8
2087 Female, age 72, unknown 197.2
2664 Male, age 75, both hemispheres 186.5
2261 Male, age 18, unknown 180.6
1796 Male, age 53, unknown 177.7
Ventral tegmental area
nTPM: 218.8
2021 Male, age 53, unknown 243.8
2223 Female, age 72, unknown 222.7
1942 Male, age 51, unknown 217.4
2410 Female, age 72, unknown 216.6
1915 Female, age 42, unknown 206.6
2218 Male, age 76, both hemispheres 205.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 209.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 209.2
Samples: 139

Max nTPM: 388.6
Min nTPM: 64.8
Std nTPM: 61.4
Median nTPM: 201.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 388.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 374.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 357.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 349.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 342.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 332.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 327.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 315.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 314.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 313.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 302.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 221.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 221.6
FF:10158-103A5 76 years, female 221.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 153.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.5
Samples: 4

Max nTPM: 177.0
Min nTPM: 133.4
Sample A Female 157.8
Sample B Female 133.4
Sample C Male 137.8
Sample D Male 177.0
Midbrain
nTPM: 153.4
Samples: 4

Max nTPM: 251.6
Min nTPM: 93.2
Sample A Female 251.6
Sample B Female 162.6
Sample C Male 106.3
Sample D Male 93.2
Periaqueductal gray
nTPM: 134.3
Samples: 3

Max nTPM: 149.2
Min nTPM: 125.3
Sample B Female 149.2
Sample C Male 128.4
Sample D Male 125.3
Superior colliculi
nTPM: 123.6
Samples: 4

Max nTPM: 141.6
Min nTPM: 109.8
Sample A Female 141.6
Sample B Female 114.9
Sample C Male 109.8
Sample D Male 128.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 20.4
Min nTPM: 12.0
Sample A Male 16.1
Sample B Male 15.8
Sample C Female 20.4
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69816834 Antisense, RP_050510_02_A03, Mouse strain C57BL/6J (56 days, male) 0.4
Midbrain
Expression energy: 0.4
69816834 Antisense, RP_050510_02_A03, Mouse strain C57BL/6J (56 days, male) 0.4

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