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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:262.9 nTPM
HPA Brain:275.7 nTPM
GTEx:262.9 nTPM
FANTOM5:272.4 Scaled Tags Per Million
Pig:193.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 259.8
1981 Female, age 72, midline 317.2
2048 Male, age 55, midline 316.8
2816 Male, age 47, midline 243.5
2194 Female, age 79, both hemispheres 230.7
2565 Male, age 75, midline 191.0
Cervical spinal cord, dorsal horn
nTPM: 275.7
2173 Female, age 72, unknown 354.0
2296 Male, age 66, both hemispheres 335.4
2069 Male, age 47, both hemispheres 292.3
1877 Male, age 55, unknown 258.5
2721 Male, age 90, both hemispheres 227.8
2297 Male, age 75, both hemispheres 186.3
Cervical spinal cord, ventral horn
nTPM: 270.3
2098 Female, age 72, unknown 386.6
2809 Male, age 90, both hemispheres 278.6
2295 Male, age 66, both hemispheres 276.2
2480 Male, age 75, both hemispheres 245.4
2068 Male, age 55, unknown 224.9
2820 Female, age 79, both hemispheres 210.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 262.9
Samples: 159

Max nTPM: 456.6
Min nTPM: 121.7
Std nTPM: 65.0
Median nTPM: 266.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 456.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 441.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 429.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 413.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 402.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 399.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 393.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 392.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 390.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 390.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 378.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 368.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 361.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 347.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 340.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 338.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 338.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 338.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 338.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 331.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 327.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 327.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 324.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 322.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 321.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 318.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 318.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 318.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 313.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 311.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 309.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 306.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 306.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 303.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 301.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 301.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 300.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 300.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 299.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 299.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 297.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 295.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 294.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 293.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 293.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 293.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 291.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 291.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 290.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 288.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 287.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 287.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 285.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 284.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 284.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 284.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 283.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 283.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 283.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 283.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 282.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 280.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 280.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 280.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 280.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 278.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 278.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 277.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 275.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 274.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 274.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 272.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 272.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 271.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 271.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 270.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 270.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 269.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 266.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 266.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 265.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 264.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 264.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 263.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 260.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 257.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 256.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 255.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 254.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 253.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 253.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 253.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 248.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 247.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 243.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 242.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 241.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 238.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 237.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 237.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 235.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 234.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 231.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 230.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 230.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 230.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 229.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 229.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 228.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 225.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 223.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 222.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 222.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 222.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 220.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 220.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 220.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 218.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 218.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 217.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 217.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 215.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 214.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 211.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 211.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 211.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 211.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 210.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 209.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 208.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 206.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 205.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 201.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 198.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 196.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 194.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 190.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 190.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 188.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 187.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 180.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 178.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 177.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 173.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 172.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 167.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 164.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 158.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 157.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 152.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 144.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 140.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 137.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 133.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 128.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 121.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 272.4
FF:10181-103D1 60 years, female 277.1
FF:10159-103A6 76 years, female 267.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 172.1
Samples: 4

Max nTPM: 189.0
Min nTPM: 151.2
Sample A Female 151.2
Sample B Female 177.6
Sample C Male 189.0
Sample D Male 170.7
Ventral spinal cord
nTPM: 193.7
Samples: 4

Max nTPM: 220.4
Min nTPM: 179.1
Sample A Female 179.1
Sample B Female 194.9
Sample C Male 180.3
Sample D Male 220.4

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