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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.3 nTPM
HPA Brain:320.6 nTPM
GTEx:134.3 nTPM
FANTOM5:300.5 Scaled Tags Per Million
Pig:133.6 nTPM
Mouse:324.3 nTPM
Allen mouse:20.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.6
Sample id Sample description nTPM
Amygdala
nTPM: 150.0
2517 Female, age 94, left hemisphere 259.8
1987 Female, age 91, left hemisphere 204.2
2814 Male, age 76, right hemisphere 123.3
2514 Male, age 75, right hemisphere 105.3
2695 Female, age 67, right hemisphere 57.3
Basal amygdala
nTPM: 320.6
2685 Female, age 94, left hemisphere 460.5
2243 Female, age 91, right hemisphere 449.4
2110 Male, age 80, left hemisphere 386.0
2827 Female, age 67, right hemisphere 270.6
1955 Male, age 76, both hemispheres 187.2
2609 Male, age 75, right hemisphere 169.6
Central amygdala
nTPM: 219.0
2826 Female, age 94, left hemisphere 384.2
2239 Male, age 80, left hemisphere 290.4
2701 Female, age 91, right hemisphere 196.0
2515 Male, age 75, right hemisphere 113.7
1905 Male, age 76, both hemispheres 110.8
Corticomedial amygdala
nTPM: 312.0
2829 Male, age 80, left hemisphere 447.8
2242 Female, age 91, right hemisphere 439.9
2535 Female, age 67, right hemisphere 365.5
2429 Female, age 94, left hemisphere 311.4
2240 Male, age 76, both hemispheres 162.1
2428 Male, age 75, right hemisphere 145.3
Lateral amygdala
nTPM: 226.5
2534 Female, age 94, left hemisphere 483.3
2256 Male, age 80, left hemisphere 295.0
2255 Female, age 91, right hemisphere 249.4
1883 Male, age 76, both hemispheres 129.7
2830 Female, age 67, right hemisphere 124.4
2516 Male, age 75, right hemisphere 77.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.3
Samples: 152

Max nTPM: 438.5
Min nTPM: 7.8
Std nTPM: 79.5
Median nTPM: 118.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 438.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 431.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 355.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 350.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 302.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 300.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 284.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 281.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 276.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 276.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 270.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 261.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 249.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 248.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 239.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 237.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 236.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 235.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 222.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 218.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 215.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 214.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 211.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 210.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 206.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 204.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 199.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 199.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 195.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 193.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 192.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 183.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 183.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 182.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 181.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 180.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 179.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 179.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 178.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 168.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 159.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 159.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 158.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 156.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 154.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 153.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 147.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 145.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 140.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 136.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 132.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 131.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 130.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 130.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 127.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 125.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 122.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 120.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 118.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 110.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 109.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 108.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 105.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 103.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 102.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 99.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 97.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 95.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 94.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 94.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 86.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 82.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 82.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 80.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 78.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 76.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 75.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 75.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 70.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 68.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 67.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 66.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 65.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 65.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 64.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 60.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 59.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 56.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 52.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 51.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 49.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 47.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 29.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 7.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

300.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 300.5
FF:10151-102I7 76 years, female 300.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.6
Pig sample Sample description nTPM
Amygdala
nTPM: 133.6
Samples: 4

Max nTPM: 215.1
Min nTPM: 76.8
Sample A Female 215.1
Sample B Female 76.8
Sample C Male 109.9
Sample D Male 132.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 324.3
Samples: 4

Max nTPM: 335.7
Min nTPM: 306.9
Sample A Male 332.9
Sample B Male 321.7
Sample C Female 335.7
Sample D Female 306.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.7
71608455 Antisense, RP_050927_01_G05, Mouse strain C57BL/6J (56 days, male) 21.4
544328 Antisense, RP_040625_01_H06, Mouse strain C57BL/6J (56 days, male) 20.0

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