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  • PCBP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.8 nTPM
FANTOM5:279.2 Scaled Tags Per Million
Pig:154.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB037113
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.8
Samples: 246

Max nTPM: 346.0
Min nTPM: 92.7
Std nTPM: 26.3
Median nTPM: 133.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 346.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 234.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 226.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 221.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 215.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 208.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 207.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 205.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 202.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 201.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 197.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 195.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 195.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 184.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 176.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 174.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 173.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 172.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 171.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 170.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 170.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 168.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 166.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 164.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 164.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 163.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 163.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 162.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 161.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 160.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 159.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 158.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 158.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 158.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 157.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 156.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 156.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 156.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 156.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 156.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 154.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 154.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 153.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 153.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 153.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 153.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 152.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 151.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 151.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 151.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 150.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 149.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 149.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 148.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 148.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 147.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 147.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 147.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 147.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 146.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 146.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 146.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 145.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 145.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 145.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 145.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 144.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 144.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 144.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 144.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 144.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 143.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 143.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 143.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 142.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 142.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 142.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 142.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 142.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 141.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 141.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 141.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 141.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 141.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 140.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 140.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 140.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 140.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 139.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 139.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 139.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 138.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 138.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 137.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 137.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 136.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 136.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 136.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 136.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 136.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 136.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 136.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 136.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 135.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 135.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 135.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 135.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 135.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 135.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 134.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 134.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 134.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 133.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 133.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 133.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 132.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 132.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 132.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 132.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 132.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 131.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 131.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 131.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 131.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 131.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 131.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 131.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 131.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 131.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 131.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 130.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 130.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 130.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 129.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 129.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 129.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 128.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 128.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 128.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 128.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 128.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 128.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 128.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 128.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 128.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 127.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 127.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 127.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 127.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 127.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 126.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 126.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 126.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 126.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 126.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 126.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 126.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 125.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 125.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 125.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 125.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 125.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 124.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 124.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 123.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 123.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 123.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 123.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 122.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 122.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 122.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 122.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 122.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 122.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 122.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 121.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 121.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 121.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 120.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 120.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 120.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 120.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 120.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 120.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 120.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 120.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 120.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 120.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 119.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 119.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 119.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 119.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 118.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 118.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 118.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 117.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 117.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 117.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 117.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 117.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 117.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 116.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 116.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 116.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 116.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 115.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 115.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 115.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 114.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 112.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 111.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 110.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 110.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 110.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 108.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 108.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 106.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 105.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 102.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 100.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 99.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 97.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 92.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 279.2
FF:10164-103B2 76 years, female 279.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.5
Pig sample Sample description nTPM
Caudate
nTPM: 154.5
Samples: 4

Max nTPM: 174.9
Min nTPM: 139.4
Sample A Female 149.0
Sample B Female 154.7
Sample C Male 174.9
Sample D Male 139.4

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