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  • PCBP1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:197.3 nTPM
HPA:164.6 nTPM
GTEx:197.3 nTPM
FANTOM5:344.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB037113
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.6
overview
Male, age 65
Small intestine sample 232
nTPM: 171.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 174.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 151.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 160.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 197.3
Samples: 187

Max nTPM: 312.0
Min nTPM: 124.4
Std nTPM: 29.9
Median nTPM: 192.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 312.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 291.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 276.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 268.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 263.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 262.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 255.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 251.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 250.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 248.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 246.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 246.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 244.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 243.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 242.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 241.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 240.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 239.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 237.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 235.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 234.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 229.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 228.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 228.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 228.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 228.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 228.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 227.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 225.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 225.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 224.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 224.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 224.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 224.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 223.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 223.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 223.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 223.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 222.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 222.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 221.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 221.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 221.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 221.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 221.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 220.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 219.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 217.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 217.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 216.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 216.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 216.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 214.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 212.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 212.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 210.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 208.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 207.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 206.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 206.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 206.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 206.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 204.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 204.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 204.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 204.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 204.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 204.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 203.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 202.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 201.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 201.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 201.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 200.3
GTEX-1192X-2526-SM-59868 50-59 years, male 199.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 199.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 198.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 197.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 197.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 196.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 196.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 196.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 195.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 195.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 194.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 194.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 193.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 193.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 193.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 193.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 193.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 192.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 192.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 192.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 191.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 191.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 191.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 191.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 191.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 190.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 190.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 189.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 189.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 189.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 188.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 188.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 188.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 187.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 187.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 187.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 186.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 186.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 186.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 186.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 185.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 185.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 185.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 184.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 184.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 184.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 183.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 183.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 183.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 183.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 183.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 182.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 181.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 181.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 181.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 181.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 181.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 181.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 181.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 181.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 180.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 180.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 179.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 179.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 179.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 179.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 178.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 177.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 177.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 176.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 175.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 175.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 174.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 174.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 173.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 173.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 170.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 169.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 168.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 168.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 168.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 168.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 167.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 166.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 166.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 165.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 165.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 165.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 164.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 164.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 163.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 162.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 161.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 159.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 158.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 158.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 158.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 157.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 157.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 156.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 155.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 154.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 154.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 153.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 151.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 150.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 149.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 148.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 147.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 145.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 142.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 124.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

344.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 344.6
FF:10024-101D6 15,40,85 years, mixed 344.6

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