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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:183.7 nTPM
HPA Brain:182.1 nTPM
GTEx:183.7 nTPM
FANTOM5:315.7 Scaled Tags Per Million
Pig:247.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.9
1981 Female, age 72, midline 197.1
2565 Male, age 75, midline 172.4
2194 Female, age 79, both hemispheres 152.7
2816 Male, age 47, midline 144.4
2048 Male, age 55, midline 142.7
Cervical spinal cord, dorsal horn
nTPM: 182.1
2173 Female, age 72, unknown 218.5
2296 Male, age 66, both hemispheres 213.6
2069 Male, age 47, both hemispheres 199.4
1877 Male, age 55, unknown 162.0
2297 Male, age 75, both hemispheres 154.6
2721 Male, age 90, both hemispheres 144.7
Cervical spinal cord, ventral horn
nTPM: 172.8
2098 Female, age 72, unknown 219.0
2809 Male, age 90, both hemispheres 189.8
2480 Male, age 75, both hemispheres 166.1
2068 Male, age 55, unknown 161.4
2295 Male, age 66, both hemispheres 161.3
2820 Female, age 79, both hemispheres 139.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 183.7
Samples: 159

Max nTPM: 398.8
Min nTPM: 121.1
Std nTPM: 37.6
Median nTPM: 178.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 398.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 324.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 298.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 297.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 288.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 271.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 270.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 266.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 247.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 244.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 237.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 236.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 233.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 232.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 227.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 221.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 221.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 220.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 220.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 217.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 215.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 215.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 211.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 209.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 207.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 207.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 206.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 204.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 203.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 203.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 202.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 201.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 201.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 200.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 200.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 200.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 200.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 199.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 199.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 198.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 197.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 194.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 194.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 192.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 192.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 192.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 190.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 190.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 189.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 189.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 189.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 186.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 185.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 185.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 184.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 184.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 184.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 184.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 183.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 183.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 183.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 182.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 181.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 181.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 181.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 180.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 180.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 180.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 179.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 179.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 179.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 179.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 179.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 178.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 178.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 178.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 177.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 177.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 177.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 176.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 176.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 175.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 175.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 174.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 173.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 172.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 172.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 171.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 171.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 171.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 171.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 170.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 170.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 169.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 168.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 166.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 166.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 165.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 165.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 165.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 165.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 164.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 164.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 164.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 164.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 162.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 162.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 162.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 161.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 161.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 160.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 160.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 159.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 157.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 156.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 155.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 155.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 155.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 154.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 154.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 152.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 152.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 152.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 151.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 151.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 149.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 149.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 148.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 144.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 143.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 142.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 140.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 138.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 136.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 136.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 136.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 135.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 125.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 121.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

315.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 315.7
FF:10181-103D1 60 years, female 357.6
FF:10159-103A6 76 years, female 273.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 230.0
Samples: 4

Max nTPM: 291.9
Min nTPM: 200.2
Sample A Female 200.2
Sample B Female 207.3
Sample C Male 291.9
Sample D Male 220.5
Ventral spinal cord
nTPM: 247.9
Samples: 4

Max nTPM: 279.1
Min nTPM: 221.4
Sample A Female 246.2
Sample B Female 245.0
Sample C Male 279.1
Sample D Male 221.4

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